Pful003558.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004617.1:17798687-17800267[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.6e-06 0.00038 21.6 0.4 1 23 94 117 94 117 0.97 2 13 0.0012 0.069 14.5 2.8 1 23 127 150 127 150 0.98 3 13 0.0012 0.069 14.5 1.6 1 23 154 177 154 177 0.97 4 13 8.9 5.2e+02 2.3 4.6 1 21 208 228 208 229 0.93 5 13 0.012 0.68 11.4 3.9 2 20 236 254 235 258 0.94 6 13 0.088 5.1 8.6 5.6 1 23 267 290 267 290 0.97 7 13 1 59 5.3 0.9 2 23 301 323 300 323 0.94 8 13 0.18 11 7.6 2.0 1 23 331 354 331 354 0.94 9 13 0.0012 0.069 14.5 1.5 2 23 364 386 363 386 0.92 10 13 0.0096 0.56 11.7 6.0 1 23 395 418 395 419 0.95 11 13 0.043 2.5 9.6 3.1 3 23 428 449 427 449 0.96 12 13 0.084 4.9 8.7 3.6 1 23 458 481 458 481 0.93 13 13 0.00042 0.024 15.9 3.5 1 23 490 513 490 513 0.96
Sequence Information
- Coding Sequence
- ATGGCAGAATTCATGGTTAACTTCAACAATGAAGCAGAAGAGGTACTTATAAAACAAGAACCCGACTTAGATTTGATCGAAACAGGTGTGGACACTGCGAGGGACCACAGGGAAAGTATCCACCTGCAGGGCAATGAAGAAATTAAGCAAGAACTCGAAATGGAGACCCATGAGTTAATCACAGACGAAAATCCTGAACTGGGCCAAGAATCCAGATTGTTTCTGAATCTGGAAAACGACAAATGCGACGCTCATGCGACAGATGAGACTATCAATAGGTTTCAATGTGAAAACTGTGATTACATATTTACAAACAGGCCTGACCTGAACAGCCACATGTCGAGTGAACATTCCGATGCAGTCGTAATCATATGGAATTTTAAATGCCAGAAATGTGATTACAAATCTACTCAAAAACGCGATGTGAGAGAACATATGATGAGTAAACACCTAAAGTGGTTTGAATGCAACAAATGTGAGTACAAAAGTAGACTTAACGGCAACCTTAAAAGTCACATGATTAAAAAACACCCTCAAGTAAATGGAATTGAATGGATTGACTGCCAGAAATCCTACTATAAGAATAAGCGGAAGGATCAAAGGGCCCAAAAAATAAAATGGTTTGAATGTGAAAGGTGCGACTATGAGTGTAGATGTGAGACCAGCCTCAAGAAACACGCCAAAAAGGTAGAGATCAAATGCTTGCAGTGCGAGaaatgtgactacaaagctAGTCTGAAGAGTCATCTACAAAGGCACATGATTTGTAAGCATGAAACTGCGAAAGAGCCGAAATGGTTTGAATGTGAGAAGTGTGACCATAAGTATAAATGTAGCGTCAGTCTACAACGACACTTGTTAAAAAACCACGCAAAAAACAGGAACGAGATTAAGTGGCtccagtgcgagaaatgcgactataaagcaAAATGGAAGAAGCTCATGCAACTGCACATGATTCGTAGACATAACGCAGAAGTGATgaaatggttcaagtgcgagcaGTGCGAGTACAGGTCTAAATGTAGCGGCAGCCTGAGGCGGCACGTGATGGGTATACACTTAAGCGCAGACGAGATCCAGTGGTTAaattgcgagaaatgcgactataaatcAAAACAAAGGAGCGACCTGAAAAAACACGTCGTTAGTAAGCATTTAAGTGAAGACGAGATAAGATGGTTTAACTGCGAGAAGTGTGATTACAAGTGTAAGCGCAATGGCACGTTGACAGAGCACGTGAAAAACAAACATCATGCACACGAGACTAAACGCGTTctgtgcgagaaatgcgacttcaAGACGAAATCGAAGCAGCATCTGCAAATGCACGTGATTAGTAAGCATCTAAATGCAGATGAAATAAATTGGTTTCAATGCGAGAAGTGCGACTACAAGTCTAAGTGTAGTAGCAGCCTGAAGCGGCACGGGATTATTAAGCACTTGAATGCGGACGAGATCAGATGGTTTAGATGCGAGATGTGCGACTACAAGTCTAAGCAAAGGAGTTATCTCAAAAAGCACACAATTAGAAGGCACGGAAATAAGGAcgagataaaatttgcaatCAGCATTTGTTGA
- Protein Sequence
- MAEFMVNFNNEAEEVLIKQEPDLDLIETGVDTARDHRESIHLQGNEEIKQELEMETHELITDENPELGQESRLFLNLENDKCDAHATDETINRFQCENCDYIFTNRPDLNSHMSSEHSDAVVIIWNFKCQKCDYKSTQKRDVREHMMSKHLKWFECNKCEYKSRLNGNLKSHMIKKHPQVNGIEWIDCQKSYYKNKRKDQRAQKIKWFECERCDYECRCETSLKKHAKKVEIKCLQCEKCDYKASLKSHLQRHMICKHETAKEPKWFECEKCDHKYKCSVSLQRHLLKNHAKNRNEIKWLQCEKCDYKAKWKKLMQLHMIRRHNAEVMKWFKCEQCEYRSKCSGSLRRHVMGIHLSADEIQWLNCEKCDYKSKQRSDLKKHVVSKHLSEDEIRWFNCEKCDYKCKRNGTLTEHVKNKHHAHETKRVLCEKCDFKTKSKQHLQMHVISKHLNADEINWFQCEKCDYKSKCSSSLKRHGIIKHLNADEIRWFRCEMCDYKSKQRSYLKKHTIRRHGNKDEIKFAISIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -