Pful015380.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004619.1:48539832-48541214[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00039 0.023 16.0 1.0 1 23 81 104 81 104 0.94 2 12 0.091 5.3 8.6 5.9 1 23 113 136 113 136 0.96 3 12 0.026 1.5 10.3 2.3 1 23 145 168 145 168 0.97 4 12 0.00094 0.055 14.8 2.4 1 23 177 200 177 200 0.94 5 12 0.0044 0.26 12.7 2.7 1 23 210 233 210 233 0.95 6 12 0.0019 0.11 13.9 5.9 1 23 242 264 242 264 0.98 7 12 1.4 84 4.8 0.4 1 21 272 292 272 295 0.88 8 12 7.4e-05 0.0044 18.3 1.0 1 23 305 328 305 328 0.94 9 12 0.0022 0.13 13.7 3.2 1 23 338 361 338 361 0.95 10 12 0.0019 0.11 13.9 5.9 1 23 370 392 370 392 0.98 11 12 1.4 84 4.8 0.4 1 21 400 420 400 423 0.88 12 12 0.047 2.8 9.5 7.4 1 23 432 455 432 455 0.94
Sequence Information
- Coding Sequence
- ATGGATGATGGATTCCTGGTCGATTTCTTCGACGAAGTCAAAGAAGAAGAATGGAGCGATGCAGAAGTGGACGACGCGAATGACACAAAAGAGGACTTGAAGATAAAAGTTGAAGAAATTGAGATAGAAGGCGAAAATCTGAACGATGGAGGAATGTCTACGTCAAAAAAATGTAACAATGAAAAATGTGATTATACAACTAAACAGAAAGCGAGTCAAAATGAAGACGAGATCAGATGGTTTGAGTGTGGGAAATGTGATTACAAAAGCAAGACGAAGGACGGCCTGAAACGGCATGTGATAAATCGACATCTGGATAAAAACCTTATTCATTGGTTTGAGTGTGAGAAATGCTGCTATAAATCCAAAAGGAAGAGAAATCTGAAACAGCATATGATTAATAAACATCTAAATGAAGACGAGatcagatggtttaagtgcgggaaATGCGACTTCAAAACTAAGATAAAGCTCTCCCTCCAACGCCATGTAAATTCTAAGCATCTAAGTGAAGAGAAGATTGATTGGTtcaagtgcgaaaaatgcgattaTAAAGCTAAGCAAAAGGTGCACCTGAAGGTACACATAACTGCTAAACATCTCAACGAAAATCAGATTCTTAAATGGTTCAAGTGCGCGAAATGCGAATACAAATCTAAATACAAGAGTGACCTGAAAATGCACATAACTAATAAACACGTCCACGAAAACGAGATTAATTGGTTCAAGTGCGCGAATTGCGACTATAAATCTAAACACAAGAACAACCTGTCAAAGCACATGTTTAAACATGTCGATCAAAACGACAGAATGTTTATGTGCGAGAAATGTGAATTCAAAACTAAATGGAAAGATGGTCTGAAGGCACACGTGGTTGCTAAACATCTCATCAAAGAAAATGAGATaaaatggttcaagtgcgaaaaatgcgattaTAAAGCTAAGCGAAAGGGGAATCTGAAGGCACACATAACTGCTAAACATCTCAACGAAAATCAGATTCTTAAATGGTTCAAGTGCGCGAAATGCGAATACAAATCTAAATACAAGAGTAACCTGAAAATGCACATAACTAATAAACACGTCCACGAAAACGAGATTAATTGGTTCAAGTGCGCGAATTGCGACTATAAATCTAAACACAAGAACAACCTGTCAAAGCACATGTTTAAACATGTCGATCAAAACGACAGAATGTTTATGTGCGAGAAATGTGAATTCAAAACTAAATGGAAAGATGGTCTGAAGGCACACGTGGTTGCTAAACATCTCAAAGAAAATGAGATaaaatggttcaagtgcgagaaatgccaGTTCAAGACTAAACGGAAGCACCTCCTGCGACACCACGTGATTAACAAACATCCCGATAAGATGGTTTAA
- Protein Sequence
- MDDGFLVDFFDEVKEEEWSDAEVDDANDTKEDLKIKVEEIEIEGENLNDGGMSTSKKCNNEKCDYTTKQKASQNEDEIRWFECGKCDYKSKTKDGLKRHVINRHLDKNLIHWFECEKCCYKSKRKRNLKQHMINKHLNEDEIRWFKCGKCDFKTKIKLSLQRHVNSKHLSEEKIDWFKCEKCDYKAKQKVHLKVHITAKHLNENQILKWFKCAKCEYKSKYKSDLKMHITNKHVHENEINWFKCANCDYKSKHKNNLSKHMFKHVDQNDRMFMCEKCEFKTKWKDGLKAHVVAKHLIKENEIKWFKCEKCDYKAKRKGNLKAHITAKHLNENQILKWFKCAKCEYKSKYKSNLKMHITNKHVHENEINWFKCANCDYKSKHKNNLSKHMFKHVDQNDRMFMCEKCEFKTKWKDGLKAHVVAKHLKENEIKWFKCEKCQFKTKRKHLLRHHVINKHPDKMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -