Pful003894.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004617.1:20802093-20805203[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.016 0.92 11.0 1.2 2 23 55 76 54 76 0.96 2 13 2.2 1.3e+02 4.2 9.4 1 23 83 106 83 106 0.96 3 13 0.22 13 7.4 1.5 3 20 117 134 115 138 0.94 4 13 0.79 47 5.6 3.6 1 23 147 170 147 170 0.94 5 13 0.0015 0.091 14.1 4.1 1 23 179 201 179 201 0.97 6 13 0.00025 0.015 16.6 1.5 2 23 211 233 210 233 0.92 7 13 0.21 12 7.5 7.8 1 23 242 265 242 265 0.94 8 13 0.36 21 6.7 1.4 1 23 274 296 274 296 0.95 9 13 0.00038 0.022 16.0 3.1 1 23 305 327 305 327 0.97 10 13 3.2e-05 0.0019 19.4 2.1 1 23 334 357 334 357 0.98 11 13 0.00031 0.018 16.3 3.0 1 23 366 388 366 388 0.95 12 13 0.0005 0.029 15.7 0.4 1 23 397 420 397 420 0.95 13 13 0.09 5.3 8.6 1.7 2 19 427 444 426 446 0.95
Sequence Information
- Coding Sequence
- ATGTCCGGCTTCCTAGTCAATTTTTATGACGAAGTCGAGGAAGCGGTGGACGTTAAACAGGAAGTGAAGGAAGAATTGCCTGATGCAGACtcggaaaataatgtaaatgTAAATATAAATTTTGAAGCTGAAACCGATCAAAAAGATAAAACCGAATGGCTTTATTGTGCTAAATGCGATTACAAATCGAAAGAAAAGCGCCTCTTAAAACGGCACGTGATCAGGCATCTGAAGCCGGTCAGATGGTTTCATTGTGACAAATGTGACTACAAATGTAAAGAAAAATACTGCCTTAAAGGGCACACCATTACAAAACATCTAAAGCCAGATAAGATTCAATGGTTTGGCTGCCAGGAATGCGAACTGAAATTTAAACGCAAGATCGGTCTCGACAATCACATAATTTGCAAGCATCTCGATGAAAACGAGGTTCATTGGTTTCACTGCGACCAATGCGACTTCAAATCTAAGCTGAAGGGTGCCCTGAGGCAGCATACCTTCAGCAGACATACAAATCGAAGCGAGATGAAGTGGTTTCGTTGCCATAAGTGTGACTACAAGAGTATACGAAAAGCTCACCTTGAAATCCACCTTGTTAGACATCTAAGTTCAGATGAGATCAAGTGGATTTATTGTGATGAATGTGACTACAAGTTTAAAGAAAAGAGTACCCTAAACAAGCACAAAATCAATAAGCATCTAACTTCAGGTGAAATCAAATGGTTTCATTGCGATAAATGTGACCACAAATGTAAAGATCGCGCCACCCTTAAAAGCCACGTTCTTTACAAGCACCTAACTTCGGATCAGGTAAAATGGTTTTATTGCGACAAATGCGATTTCAAATCCAAAAAAAGGTGGCCTCTTAACACCCACGCAGTTAAGCATCTCAACAAGGACGAGATTCGATGGTTTCGCTGCGAAAAATGCGACTGTAAGTACAAGCGGAAGGGTGACCTGACAATGCACGTGAGCATTCACAATCCTGGTAAAATCGAGTTTAAATGCGACAAATGCGACGCAACATATAAGCGAAAGAGCAGCCTAAGAGGTCACGAGAGGCGTAACCATCGCGAGGCAGACGAAATAAAATGGTTTCAATGCGGGGAGTGCGACTACAAGTGCAAAACAAGGAGCGATTTGAACAAACACGGCGTTAAGCATCTCTGCGAAAACGAGATTGAATGGTTTCCCTGCACTGAATGCGACTACAAGGCTAAGCGAAAAGATGGCCTCAAAAAGCACGTAGGTACGATGCATTCAGTGGTCCAGTGGCTTCAATGCGACAAGTGCGATTACAAATGTAAAGTGAAATGGCAGCTGAAATTGCATAATGAGTTGAATGATGTTTTGGAGGCTGTTAATCTTGAGGCACCATCTATTGTTTTGCTGGGAGATTTGAATGTTAATCTTTTAAAAACAAATCCTAGTAACTCCAAAAAGTTGTTGAACCTTTTCAAAATGTTTGACTCATCTCAGGTAATCAAAGAACCGACTCGTGTTACTGAAGAAACAGAATCTCTGATTGATGTGATATGTCTCTCAGACAGTATAGATTTGGGCAGTTCAAGGGGAGACACATTGGATATTGTGCCTCGTTGCACCGATCATATGCTTGTGTTCTGTGATGTTCTTGTCGAAGAGAAAAAGGTAAGTCCACAAGCTCTTTTCCGGAGGGATTTAAAGAATAtcgatttaaataattttgcGATTCATGCTGTTTATGGTACACCGTGGGAAAGAGCGAGTGAACTATCTGATATTGACCATAAAGTTCACTATTTCAATAAATGCATTTTAGATCTGTTTGACTACCATGCACCCCTTAAAAAAATTGAGCCTAGACGCCCAAGTAAACCTTATATCACTTATAACATTAAATTAATGGTTAAAGAAAAACGACCAAATTATGCCCGAGAGATCATTTTTGCATACTCTGAATATGTGGCCTACAATATCTATCCCTCGTAG
- Protein Sequence
- MSGFLVNFYDEVEEAVDVKQEVKEELPDADSENNVNVNINFEAETDQKDKTEWLYCAKCDYKSKEKRLLKRHVIRHLKPVRWFHCDKCDYKCKEKYCLKGHTITKHLKPDKIQWFGCQECELKFKRKIGLDNHIICKHLDENEVHWFHCDQCDFKSKLKGALRQHTFSRHTNRSEMKWFRCHKCDYKSIRKAHLEIHLVRHLSSDEIKWIYCDECDYKFKEKSTLNKHKINKHLTSGEIKWFHCDKCDHKCKDRATLKSHVLYKHLTSDQVKWFYCDKCDFKSKKRWPLNTHAVKHLNKDEIRWFRCEKCDCKYKRKGDLTMHVSIHNPGKIEFKCDKCDATYKRKSSLRGHERRNHREADEIKWFQCGECDYKCKTRSDLNKHGVKHLCENEIEWFPCTECDYKAKRKDGLKKHVGTMHSVVQWLQCDKCDYKCKVKWQLKLHNELNDVLEAVNLEAPSIVLLGDLNVNLLKTNPSNSKKLLNLFKMFDSSQVIKEPTRVTEETESLIDVICLSDSIDLGSSRGDTLDIVPRCTDHMLVFCDVLVEEKKVSPQALFRRDLKNIDLNNFAIHAVYGTPWERASELSDIDHKVHYFNKCILDLFDYHAPLKKIEPRRPSKPYITYNIKLMVKEKRPNYAREIIFAYSEYVAYNIYPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -