Basic Information

Insect: Pycnomerus fuliginosus
Gene Symbol: -
Assembly: GCA_963924575.1
Location: OZ004625.1:12236226-12239442[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.004 0.23 12.9 6.1 1 23 252 274 252 274 0.97

2 14 0.0015 0.09 14.2 1.9 2 23 281 302 280 302 0.97

3 14 0.0067 0.39 12.1 2.1 1 23 308 330 308 330 0.97

4 14 0.0015 0.086 14.2 7.3 1 23 335 358 335 358 0.91

5 14 0.018 1 10.8 4.1 1 23 364 387 364 387 0.92

6 14 0.0081 0.47 11.9 0.5 2 23 398 419 397 419 0.96

7 14 0.73 42 5.7 0.0 2 23 424 446 423 446 0.89

8 14 0.064 3.8 9.1 1.5 3 23 455 476 454 476 0.95

9 14 2.4e-05 0.0014 19.8 4.7 2 23 493 514 492 514 0.97

10 14 0.00084 0.049 15.0 2.5 2 23 521 543 520 543 0.94

11 14 3 1.7e+02 3.8 0.8 1 20 550 569 550 573 0.88

12 14 0.089 5.2 8.6 0.9 2 23 597 617 596 617 0.94

13 14 0.00012 0.0068 17.7 0.6 1 23 622 645 622 645 0.97

14 14 0.031 1.8 10.1 4.1 1 23 653 676 653 676 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.004	0.23	12.9	6.1	1	23	252	274	252	274	0.97
2	14	0.0015	0.09	14.2	1.9	2	23	281	302	280	302	0.97
3	14	0.0067	0.39	12.1	2.1	1	23	308	330	308	330	0.97
4	14	0.0015	0.086	14.2	7.3	1	23	335	358	335	358	0.91
5	14	0.018	1	10.8	4.1	1	23	364	387	364	387	0.92
6	14	0.0081	0.47	11.9	0.5	2	23	398	419	397	419	0.96
7	14	0.73	42	5.7	0.0	2	23	424	446	423	446	0.89
8	14	0.064	3.8	9.1	1.5	3	23	455	476	454	476	0.95
9	14	2.4e-05	0.0014	19.8	4.7	2	23	493	514	492	514	0.97
10	14	0.00084	0.049	15.0	2.5	2	23	521	543	520	543	0.94
11	14	3	1.7e+02	3.8	0.8	1	20	550	569	550	573	0.88
12	14	0.089	5.2	8.6	0.9	2	23	597	617	596	617	0.94
13	14	0.00012	0.0068	17.7	0.6	1	23	622	645	622	645	0.97
14	14	0.031	1.8	10.1	4.1	1	23	653	676	653	676	0.97

Sequence Information

Coding Sequence: ATGCGGTGGTTTGATCTTCTAAACCTCAATAATGCTCTTTGGGAAGAAGATTTGAGGGTGTGCTCTCTGCATTTCTGTAACAATTGCTATAGTACAAATGAAACGGTTGTGGAACAAGAAAGGTGTATACAGTTGAAGAAAAACGCAGTACCTCATTTGATGATAGATAATGAAGGCCAATGTCACGGAAGTGAGGAAGTGGAAATGGCTTACGTGGTCGACGAGCACGACTATTGCGTCCAAGCAGGCGAATCATCCCCCGTGGAAGAAGACTTTGTAATTTTAAAATCGAGTGACCCTGACTCGAACTTTAAGTACCATTCCTTGAAAAAAACTATTCTATCTGAACTTAAAGACGTTTGCCGCATTTGTCTGCAACCGATTCTCGACGCAAACTTCAAAGAGCTTTGCGACAAAAGTGAAGACAACATTTTTCATAATATCCACAATCTGTTGCCTGATTTAGACCTCTTTATCTATTCGTATCAGGCGGTTTGCGGGAAATGCTGCGAGATTATCGAATCTTTCGCAAACTTAAGACACACTTCTCAGGCAAACGAAGTTTTGATGGTTGAACTCATTAACAGAGATTCAGAGATAGATTTGATAATAAACGAGGACGATATAGTTAAAAATGAGGGGTGCGAGGAAAGCAAAGATTTTGATTTGGAAAATGACGTTTCAGATTTTGAATTAAAGCCACCAGAAGGCGATATTGTTGAAGATTCGAAACATCAAAAAGAAAGCAAGGCACACGAATGTGATATTTGTCACAAGATCTTGTCGACTACGTCATCCTTTCAAAAGCACAAGAAACGTCACAAGATGCATAACAAGCTGCAATGTCACGTGTGCGCAAAAAGCTATTCCGAAATTCACGACTTGACTGAGCACATTAAAAGCCACAATCCAGTCAAGGAGTTTATTTGCGACCAATGCGGAGCCGCTTTTCACGCCCACAAAAACCTTCAAATGCATCAAAAACTCCACCTCGACCCCAAACACACGTGCACGCAATGTCACAAAATTTTCCACACAAGAAGCAACCTGCGACGACATTTTGTTTCTGTGCACGACGAACGCAAAAGATTCACTTGCGACCAATGCAAGCGAGTTTTCAAAACAGAATCCTGCATGCTTACACATAAAGAGCTCAAGCATGAGTGGATACCTGACTTAAGTAAAGTCTGGAAATGTCCGGTGTGTCAAAAATATTTTAAGTTACCTTTTGACCAAGCCAAACACTTGCAGAACCACCCTAAAAACTCGCAGTGTCAATTCTGCGAGGAGAGTTACGCAGGGGAGGAGGCGTTGATTAGCCACGTGGTGCAAAATCACCCCGATTTACCCTGGCAACGAGCCTGCCGGTTTTGCTCGAAAATCTTCGCCCTTGAGAAGAGCTTGATAAAACATTTGAAACACGGGCACAGTTTTGATTACGTCACGCAGACTAGGATCCCCCCCAAACGGGTTTGGCAATGCAAACATTGCGGCAAGGAATTCCCCCGTTGCTCGAAGCTAAAGGAGCATTTACAGTCGCACAGTGAAGGAAAGTCAGTCTCCTGTCAACATTGCGTCAAATCCTTCAAAAACACAGCCTACTTGCGCAAGCACGAGCTCATGTTTCATGTCAACCAAAAGTGGAGGTATACTTGTGAGTTTTGTCAGCACAAGTACGGGCTTTTGGCGGAGTTTGTAAGGCACAAAGTAGGCGCGCATGGCTGGGACCCTGAAGATGGAGAATCCAAGGCCATGATAGAGAAATATTGTGCGAAAAAGCAACCGTGGAAATGTCCATTGTGCGAGAAAGAATTTATGCCCAGGTCCAAGTATAGACATCTGAAGACGCACAATAGTTGCCAGTTTGTCTGTGAATATTGCCCGAAAACTTTCATGGAAGAGAGAAGTTTGAAGAGTCATTTGATGATTTTTCATAAACTCGACGAGACGTGGAAGTTCACTTGTGCCGTTTGTAATCACAGGTTTTTCCATAAGGTTGCCTTAGTTAATCATGCCAAAAAGAAACATGGTATTGATTtagttaaaattaaaaatatgtag
Protein Sequence: MRWFDLLNLNNALWEEDLRVCSLHFCNNCYSTNETVVEQERCIQLKKNAVPHLMIDNEGQCHGSEEVEMAYVVDEHDYCVQAGESSPVEEDFVILKSSDPDSNFKYHSLKKTILSELKDVCRICLQPILDANFKELCDKSEDNIFHNIHNLLPDLDLFIYSYQAVCGKCCEIIESFANLRHTSQANEVLMVELINRDSEIDLIINEDDIVKNEGCEESKDFDLENDVSDFELKPPEGDIVEDSKHQKESKAHECDICHKILSTTSSFQKHKKRHKMHNKLQCHVCAKSYSEIHDLTEHIKSHNPVKEFICDQCGAAFHAHKNLQMHQKLHLDPKHTCTQCHKIFHTRSNLRRHFVSVHDERKRFTCDQCKRVFKTESCMLTHKELKHEWIPDLSKVWKCPVCQKYFKLPFDQAKHLQNHPKNSQCQFCEESYAGEEALISHVVQNHPDLPWQRACRFCSKIFALEKSLIKHLKHGHSFDYVTQTRIPPKRVWQCKHCGKEFPRCSKLKEHLQSHSEGKSVSCQHCVKSFKNTAYLRKHELMFHVNQKWRYTCEFCQHKYGLLAEFVRHKVGAHGWDPEDGESKAMIEKYCAKKQPWKCPLCEKEFMPRSKYRHLKTHNSCQFVCEYCPKTFMEERSLKSHLMIFHKLDETWKFTCAVCNHRFFHKVALVNHAKKKHGIDLVKIKNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -