Basic Information

Insect: Pycnomerus fuliginosus
Gene Symbol: -
Assembly: GCA_963924575.1
Location: OZ004620.1:11277176-11278395[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.12 6.8 8.2 0.1 2 23 104 125 103 125 0.96

2 8 0.0002 0.012 16.9 2.4 1 23 129 151 129 152 0.95

3 8 1.5e-05 0.0009 20.4 0.5 2 23 165 186 164 186 0.96

4 8 6.6e-05 0.0039 18.5 2.2 1 23 190 214 190 214 0.98

5 8 0.022 1.3 10.5 2.4 1 23 220 242 220 242 0.94

6 8 1.9e-05 0.0011 20.2 1.2 1 23 248 271 248 271 0.95

7 8 0.0005 0.03 15.7 4.0 1 23 276 298 276 298 0.98

8 8 0.00038 0.022 16.1 0.4 1 23 304 326 304 326 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.12	6.8	8.2	0.1	2	23	104	125	103	125	0.96
2	8	0.0002	0.012	16.9	2.4	1	23	129	151	129	152	0.95
3	8	1.5e-05	0.0009	20.4	0.5	2	23	165	186	164	186	0.96
4	8	6.6e-05	0.0039	18.5	2.2	1	23	190	214	190	214	0.98
5	8	0.022	1.3	10.5	2.4	1	23	220	242	220	242	0.94
6	8	1.9e-05	0.0011	20.2	1.2	1	23	248	271	248	271	0.95
7	8	0.0005	0.03	15.7	4.0	1	23	276	298	276	298	0.98
8	8	0.00038	0.022	16.1	0.4	1	23	304	326	304	326	0.98

Sequence Information

Coding Sequence: ATGGAACTAAACGAAATGATACTGGACAATTGCCGCCTCTGCTACAGTAAACCTGGCAAATATGAAATTCACAAAGACACAAATTTAATAaaggacatttttgaaaacactaCGATCAATGTCAACGACGAGGCCAAAGACTTACTACCCTGCAGCATTTGCAACAAGTGCAAAGGAACAATCAAGAAGATCAATCATTACAAAGATTTAGTTAAAAATGTAGATAGATCATTACGAAAGCTTTTAGAAAGATCCCAATTACAGTTAGATGATAGCAATGATTTGGAATCTTCAAACTCGGTTTTACAAAAATGTGATCTGTGCCCTGCTGTGTTTGGCGATGAGTTATTATTTAAAGAACATACAGAATCACATTTATCAAATTTTGAGTGTAATAGATGTAAGAAGTTATTTAATTCTAAGAGCAGTCTTGAAGCACACAATTTAGTTCATCATGAAAATTCAACTGATGTGGACTCCAGTGAAGCACTAAATTGCAAAATATGTAACAAGAACTTTAAAACTGAAGGAGAATTGTCCAACCATCTAATAATGCACACAGTAAAGTACACTTGCACTTGGGAAAACTGTGGAAAAGTGTGTACTTCTGCATatagtttaaaaaatcataaattaAGGCATGAAGGAAAACGTCCTTTCCTATGCGTTACATGCGGTAAAgggtttattacaaaaaattctTTAAGCTGCCATGAAAAAACCCATTTGGAAGTTAAAGCCCACACTTGTAAAATATGCGATATTGGGTTTTCAGTTCGAAGTAATTTGAGGGCACATGAGAAAAATTATCATGAGGGAATAAGGTTCTACTGCTCGCAATGTACTAGGGTTTTTATGAACAAATGCAGTTTAGAAAGACATGAGAAAATCCATGCTGGGGTAAAGGAGTTTCAGTGTGAATCGTGCCCTGCAGCCTTTTACACAAGAAAGGAACTTGTGAAACATGGACGATATCATTTGAATGGACCAATTTTGAGACATGATAGCACTTTTTTATCTCACTGTATCGTCGAAGACTAG
Protein Sequence: MELNEMILDNCRLCYSKPGKYEIHKDTNLIKDIFENTTINVNDEAKDLLPCSICNKCKGTIKKINHYKDLVKNVDRSLRKLLERSQLQLDDSNDLESSNSVLQKCDLCPAVFGDELLFKEHTESHLSNFECNRCKKLFNSKSSLEAHNLVHHENSTDVDSSEALNCKICNKNFKTEGELSNHLIMHTVKYTCTWENCGKVCTSAYSLKNHKLRHEGKRPFLCVTCGKGFITKNSLSCHEKTHLEVKAHTCKICDIGFSVRSNLRAHEKNYHEGIRFYCSQCTRVFMNKCSLERHEKIHAGVKEFQCESCPAAFYTRKELVKHGRYHLNGPILRHDSTFLSHCIVED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -