Pful015427.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004619.1:48733023-48745203[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.062 3.6 9.1 3.3 1 23 89 112 89 112 0.94 2 23 0.009 0.52 11.7 1.5 2 23 121 143 120 143 0.93 3 23 0.0035 0.21 13.0 1.8 1 23 152 175 152 175 0.96 4 23 0.006 0.35 12.3 1.1 1 23 184 207 184 207 0.95 5 23 0.18 11 7.6 1.5 1 20 216 235 216 236 0.95 6 23 3.4 2e+02 3.6 0.9 1 12 248 259 248 264 0.84 7 23 0.22 13 7.4 4.9 1 23 340 363 340 363 0.94 8 23 1.7 97 4.6 1.3 2 23 372 394 371 394 0.93 9 23 0.0017 0.099 14.0 4.4 1 23 403 426 403 426 0.98 10 23 0.019 1.1 10.7 2.8 1 23 435 458 435 458 0.96 11 23 0.019 1.1 10.7 2.8 1 23 467 490 467 490 0.96 12 23 0.18 11 7.6 1.5 1 20 499 518 499 519 0.95 13 23 3.4 2e+02 3.6 0.9 1 12 531 542 531 547 0.84 14 23 0.0025 0.15 13.5 2.5 1 23 623 646 623 646 0.95 15 23 0.53 31 6.2 1.0 2 23 655 677 654 677 0.92 16 23 0.0017 0.099 14.0 4.4 1 23 686 709 686 709 0.98 17 23 0.034 2 9.9 2.4 1 23 718 741 718 741 0.95 18 23 0.025 1.5 10.3 2.8 1 23 750 773 750 773 0.95 19 23 0.034 2 9.9 2.4 1 23 782 805 782 805 0.95 20 23 0.025 1.5 10.3 2.8 1 23 814 837 814 837 0.95 21 23 0.019 1.1 10.7 2.8 1 23 846 869 846 869 0.96 22 23 0.022 1.3 10.5 2.6 1 23 878 901 878 901 0.94 23 23 0.0035 0.21 13.0 4.4 1 23 910 933 910 933 0.94
Sequence Information
- Coding Sequence
- ATGGCGTCATTCTCAGTCGACTTTTacgatgaagttgaagaggaaGAGGAGATTGTTAAACTGGAACCAAAGGAGGAGTGGAACGTGGACAACGCGAATTTCGGTGAAGAAGTAAAGATAGAAATTGAGGAAGAAATCGAAATCAAGTGGCATGAGTTAAATGTATCAATCCCACTTCTGAGCGTGGATCAAGCGGAAAAATTGAAGGACGGGGAATGTGCCGCTAAATCGTTATTACAGCAGGAGGCAAATGAACCCAAATGGTTTGAATGTGAGCAGTGTGACTACAAAACTTTACGTAAGCGAAACCTGAAGAAACATACGACTAGCAAACACTCGAGCGATGATGCAGAATTGCTTGAATGCGATAGGTGCGATTTCAAAACCAAGCGGAAGATTAACCTGAGAAAGCACGTCATTAATAAGCATTTAAGTGAAGACGAGATTgagtggttcaagtgcgagaaatgcgactataaagctaAAACGAAGGATGGCCAGCGTCGGCACATGAAGGCTCAACATCTACGTGAAGATGAGATtaggtggtttaagtgcgagaaatgcgactataaagctaAAACGAAGGATGGCCAGCGTCGGCACATGATTGGTCAGCATCTACGTGAAGatgagattagatggtttaggtgcgaaaaatgcgagtaCAAGGCTAAGCGAAAGGAATGCCTGCGACTGCACGTCATTTGTAAACATCTAAACAGAAATGAAACAAAGTGGTTCATCTGCGAGAAATGTGATTACAAATTCGACTTTTacgatgaagttgaagaggaaGAGGAGATTGTTAAACTGGAACCAAAGGAGGAGTGGAACGTGGACAACGCGAATTTCGGTGAAGAAGTAAAGATAGAAATTGAGGAAGAAATCGAAATCAAGTGGCATGAGTTAAATGTATCAATCCCACTTCTGAGCGTGGATCAAGCGGAAAAATTGAAGGACGGGGAATGTGCCGCTAAATCGTTATTACAGCAGGAGGCAAATGAACCCAAATGGTTTGAATGTGAGCAGTGTGACTACAAAACTTTACATAAGCGAAACCTGAAGAGACATACGACTAGCAAACACTCGAGCGATGATGCAGAATTGCTTGAATGCGATAGGTGCGATTTCAAAACCAAGTGGAAGATTAACCTGAGAAAGCACGTCACTAGTAAGCATTTAAGTGAAGACGAGATTgagtggttcaagtgcgagaaatgcgactataaagctaAAACGAAGGATCACCAGCGTCGGCACATGATTACTCAACATCTACGTGAAGATGAGATtaggtggtttaagtgcgaaaaatgcgactataaagctaAAACGAAGGATCGCCAGCGTCGGCACATGAAGGCTCAACATCTACGTGAAGATGAGATtaggtggtttaagtgcgaaaaatgcgactataaagctaAAACGAAGGATCGCCAGCGTCGGCACATGAAGGCTCAACATCTACGTGAAGatgagattagatggtttaggtgcgaaaaatgcgagtaCAAGGCTAAGCGAAAGGAATGCCTGCGACTGCACGTCATTTGTAAACATCTAAACAGAAATGAAACAAAGTGGTTCATCTGCGAGAAATGTGATTACAAATTCGACTTTTacgatgaagttgaagaggaaaAGGAGATTGTTAAACTGGAACCAAAGGAGGAGTGGAACGTGGACAACGCGAATTTCGGTGAAGAAGTAAAGATAGAAATTGAGGAACAAATCGAAATCAAGTGGCATGAGTTAAATGTAGCAATCCCACTTCTGAGCGTGGATCAAGCGGAAAAATTGAAGGACGGGGAATGTGCCGCTAAATCGTTATTACAACAGGAGGCAAATGAACCTAAATGGTTTGAATGTGAGGAGTGTGACTTCAAATCTATACACAAGCAAAACCTGAAGAGACATACGACTAGTGGACACTCGAGCGATGATGCAAAATTGCTTGAATGCGATAAGTGCGATTTCAAAACCAAGTGGAAGATTAACCTGAGAAAGCACGTCATTAATAAGCATTTAAGTGAAGACGAGATTgagtggttcaagtgcgagaaatgcgactataaagctaAAACGAAGGATCACCAGCGTCGGCACATGATTACTCAACATCTACGTGAAGATGAGATtaggtggtttaagtgcgaaaaatgcgagtaCAAGGCTAAAGTAAAGAACAGCCTGCACAAGCACATGATTGGTCAGCATCTACGTGAGGATGAGATtaggtggtttaagtgcgaaaaatgcgagtaCAAGGCTAAACTAAAGACCAACCTGCACAAGCACATGATTGGTCAGCATCTACGTGAAGATGAGATtaggtggtttaagtgcgaaaaatgcgagtaCAAGGCTAAAGTAAAGAACAGCCTGCACAAGCACATGATTGGTCAGCATCTACGTGAGGATGAGATtaggtggtttaagtgcgaaaaatgcgagtaCAAGGCTAAACTAAAGACCAACCTGCACAAGCACATGATTGGTCAGCATCTACGTGAAGATGAGATtaggtggtttaagtgcgaaaaatgcgactataaagctaAAACGAAGGATCGCCAGCGTCGGCACATGAAGGCTCAACATCTACGTAAAGATGAGATtaggtggtttaagtgcgaaaaatgcgagtaCAAGGCTAAGCAGAAGGGAAGCCTCCAACAGCACGTGATTCATAAACATGTGAACGGAGATGAAATAAAGTGGTTCGTCTGCGAGAAATGTGACTACAAATGCAAGAAAAAGGGGAACCTAAAATCTCACGTGTCGTATAGGCACCTTGATAAAAATGAAATGAAGTAA
- Protein Sequence
- MASFSVDFYDEVEEEEEIVKLEPKEEWNVDNANFGEEVKIEIEEEIEIKWHELNVSIPLLSVDQAEKLKDGECAAKSLLQQEANEPKWFECEQCDYKTLRKRNLKKHTTSKHSSDDAELLECDRCDFKTKRKINLRKHVINKHLSEDEIEWFKCEKCDYKAKTKDGQRRHMKAQHLREDEIRWFKCEKCDYKAKTKDGQRRHMIGQHLREDEIRWFRCEKCEYKAKRKECLRLHVICKHLNRNETKWFICEKCDYKFDFYDEVEEEEEIVKLEPKEEWNVDNANFGEEVKIEIEEEIEIKWHELNVSIPLLSVDQAEKLKDGECAAKSLLQQEANEPKWFECEQCDYKTLHKRNLKRHTTSKHSSDDAELLECDRCDFKTKWKINLRKHVTSKHLSEDEIEWFKCEKCDYKAKTKDHQRRHMITQHLREDEIRWFKCEKCDYKAKTKDRQRRHMKAQHLREDEIRWFKCEKCDYKAKTKDRQRRHMKAQHLREDEIRWFRCEKCEYKAKRKECLRLHVICKHLNRNETKWFICEKCDYKFDFYDEVEEEKEIVKLEPKEEWNVDNANFGEEVKIEIEEQIEIKWHELNVAIPLLSVDQAEKLKDGECAAKSLLQQEANEPKWFECEECDFKSIHKQNLKRHTTSGHSSDDAKLLECDKCDFKTKWKINLRKHVINKHLSEDEIEWFKCEKCDYKAKTKDHQRRHMITQHLREDEIRWFKCEKCEYKAKVKNSLHKHMIGQHLREDEIRWFKCEKCEYKAKLKTNLHKHMIGQHLREDEIRWFKCEKCEYKAKVKNSLHKHMIGQHLREDEIRWFKCEKCEYKAKLKTNLHKHMIGQHLREDEIRWFKCEKCDYKAKTKDRQRRHMKAQHLRKDEIRWFKCEKCEYKAKQKGSLQQHVIHKHVNGDEIKWFVCEKCDYKCKKKGNLKSHVSYRHLDKNEMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -