Pful015418.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004619.1:48701017-48702720[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.57 33 6.1 5.0 1 23 128 151 128 151 0.93 2 14 0.0018 0.11 13.9 4.5 1 23 160 182 160 182 0.98 3 14 0.00017 0.0097 17.2 2.0 1 23 191 214 191 214 0.97 4 14 0.0077 0.45 12.0 2.9 1 23 223 246 223 246 0.97 5 14 0.001 0.06 14.7 2.5 2 23 256 278 255 278 0.96 6 14 0.0077 0.45 12.0 2.9 1 23 287 310 287 310 0.97 7 14 0.0022 0.13 13.7 1.2 2 23 320 342 319 342 0.95 8 14 6.2 3.6e+02 2.8 6.7 1 23 351 374 351 374 0.95 9 14 0.0018 0.11 13.9 2.4 2 23 384 406 383 406 0.95 10 14 0.0032 0.19 13.2 1.7 1 22 415 436 415 438 0.90 11 14 0.0022 0.13 13.7 0.8 1 23 447 470 447 470 0.96 12 14 0.0021 0.12 13.7 2.8 1 23 479 502 479 502 0.96 13 14 0.00073 0.042 15.2 2.5 1 23 511 534 511 534 0.93 14 14 0.00086 0.05 14.9 1.9 1 23 543 566 543 566 0.96
Sequence Information
- Coding Sequence
- ATGGCATCAGAATTCGTGGTCGGCTTCCTCGCCGAAATCAAAGAAGAAAAAGAGGAAACTATTAAGGAAGAAATGAACGATTCAGATGACGAAGAAGCCACGGAGGGAAAATTCGAAATCAAGGAGGAAATTAAAATTGAGTGGCACGAGCTGAATACGTCCATCCCTCTTCTGAACGTGGATCAAGAAGGAAGATTGAAGGACGAAGATTGTGAATGGTTTGAATGTGGGGAGTGTGACCACAAATCTATACACGAACGAAACGCGAATAGTAACGATAATGTAAAATTACTTAAATGCGATAGAAGCGACTACAGCACTAAAAATAAAGTGTACATGAAGAATCATGTGACTAGAAAGCATACTCTAGCAAGGAAAAGGTTTAAATGCGACAAATGCGACCACAAAGCTAATTTTAAAAGTCACATGGATCGACACGTGATCAATAAACATCTAAATGAAAGCGAGATCATGTCTTTCAAGTGCGAAAAATGCAACTATAAAGCTAAACAGAAGTTTGACCTGCATCGCCACATGATTAATCATTTAAGCGAAGAAGAGATTAgctggttcaagtgcgagaaatgcgactataaagctaAACTTAAGTCTAACCTGCGTACGCACATGATTAGACAGCATTTAAGTGAAGATGAGATCAAATGGTTTAAATGCgataaatgcgactacaaaaccaAGTTTAAAGGTCGGCTTAATGCACACACAAAAAACATGCATTTAAATGCAGACGAAATTGAGTggattaagtgcgagaaatgcgactatagagCGAAACAGAAGATTAACCTGCATAAGCACATGATTAGACAGCATCGAACTAAAGatgagattagatggtttaaatgcgataaatgcgactacaaaaccaAGTTTAAAGGTCGGCTTAATGCACACACAAAAAACATGCATTTAAATGCAGATGAAATCGAGTggattaagtgcgagaaatgcgactataaagccAAACTAAAGTTTAACCTGAACAGGCACATGATTAATCAGCATCTAAGTGAAGacgagattagatggtttaaatgcgataaatgcgactacaaaaccaAGTGTAAAACTCGGCTTAATTCGCACACAAAAAACATGCATTTAAATGCAGATGAAATCGAATGGATTaaatgcgagaaatgcgactacagaACTAAACAGAAGATTAACCTGCATATGCACATGATTAATCAGCATCTACGTGAAGACgaaattagatggtttaagtgcgagaaatgcgactatcgAGCTAAAATGAAATCGAGCCTCAAAAAACACGAGATTGATAAGCATTCAATTGGGGGCGAAATTAAATACTTTGAGTGCGACAAATGCGACTTTAAGGGCAAATCGAGGATTAGCCTGAACCGCCACATAATTTCCAAACACGTAAAAGCAAGCGATATcaggtggtttaagtgcgagaaatgcgactatgaAGCTAAACTAAAGTATAACCTGCACAGGCACATGATTAATCAGCATCTACGTGAAGAAGAGATtaggtggtttaagtgcgagaaatgcgactatagaaCTAAAATTAAGTCGAATCTCAAAAAACACGAGATTAATAGGCATTCAGTTGGAATCGAAATGAAATCGTTtgagtgcgagaaatgcgatttCAAAACTAAAGTCAAGGGCAACCTGAAAAAGCACACGATCAGCAAACATAAATAA
- Protein Sequence
- MASEFVVGFLAEIKEEKEETIKEEMNDSDDEEATEGKFEIKEEIKIEWHELNTSIPLLNVDQEGRLKDEDCEWFECGECDHKSIHERNANSNDNVKLLKCDRSDYSTKNKVYMKNHVTRKHTLARKRFKCDKCDHKANFKSHMDRHVINKHLNESEIMSFKCEKCNYKAKQKFDLHRHMINHLSEEEISWFKCEKCDYKAKLKSNLRTHMIRQHLSEDEIKWFKCDKCDYKTKFKGRLNAHTKNMHLNADEIEWIKCEKCDYRAKQKINLHKHMIRQHRTKDEIRWFKCDKCDYKTKFKGRLNAHTKNMHLNADEIEWIKCEKCDYKAKLKFNLNRHMINQHLSEDEIRWFKCDKCDYKTKCKTRLNSHTKNMHLNADEIEWIKCEKCDYRTKQKINLHMHMINQHLREDEIRWFKCEKCDYRAKMKSSLKKHEIDKHSIGGEIKYFECDKCDFKGKSRISLNRHIISKHVKASDIRWFKCEKCDYEAKLKYNLHRHMINQHLREEEIRWFKCEKCDYRTKIKSNLKKHEINRHSVGIEMKSFECEKCDFKTKVKGNLKKHTISKHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -