Pful015518.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004619.1:49477583-49479172[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00056 0.033 15.5 3.3 2 23 94 116 93 116 0.92 2 13 2.4e-06 0.00014 23.0 2.1 1 23 125 147 125 147 0.98 3 13 0.0077 0.45 12.0 6.7 1 20 156 175 156 179 0.95 4 13 0.0021 0.12 13.7 1.3 1 23 188 211 188 211 0.97 5 13 0.63 37 5.9 10.5 1 23 220 243 220 243 0.95 6 13 0.00012 0.0073 17.6 6.6 1 23 252 275 252 275 0.96 7 13 0.00062 0.036 15.4 4.1 1 23 284 307 284 307 0.96 8 13 4.1e-05 0.0024 19.1 2.5 1 23 316 339 316 339 0.98 9 13 2e-05 0.0012 20.1 2.8 1 23 348 370 348 370 0.98 10 13 9.2e-05 0.0054 18.0 2.6 1 23 379 402 379 402 0.96 11 13 0.011 0.62 11.5 4.3 1 23 411 434 411 434 0.91 12 13 0.44 26 6.4 7.3 1 23 471 495 471 495 0.91 13 13 0.0011 0.065 14.6 0.4 2 23 505 527 504 527 0.94
Sequence Information
- Coding Sequence
- ATGGCTGAAGGATTCTTGGTCGATTTTTTCGACGAAGTCaaagaggaaatcaaggaagaAGTGAAAGAAGAATGGGGTGAAGCAGAAATGGACGACGCGAACGCTCCCAAAGAAGAGTTgataaaagttgaagaagaAATCGAGATTGTGGAGCATCCATGTAATGTAGATGCATGCCGTGATTTGTCCGTAATAGGTACATTTGTGCCCCTGAAACGTAACAAGTCAAAGCACCTGACAAGTCATTCggaagaaaaaaatgaaaagattAAGTGGGTTTATTGTtacaaatgcgactacaaaactaaGCAGAAAAGTCACCTGCAACGCCACATAACTGCTAAGCATCTAAGTGAAGAGGAGATTGAATGGTTCAGGTGcgggaaatgcgactataaattTAAACTGAAGTCAAACCTGAAACAGCACATGATTATACATCTGGATGTGGAAGAGATTAAATGGTTtaggtgcgagaaatgcgactatagatGTAAAAAGAAGGCCAACCTGAAATTGCACATGATTTGTAAGCATTTAAGTGAAAACGaaattaaatggtttaagtgcgaaaaatgcgccTACAAATCTAAACAGCAGGGTGGCCTGAAGAACCACCTGCAAAGCAACCATGTCAACGAAAACGAAATTAATTGGTTTAGGTGCGAGAAGTGCGACTATAGATGTAAACACAAGCGCTGCATGAACGATCACATGACTAATAAACATCTTGATGCAGACAAGATAAAATGGTTCAAGtgtgagaaatgcgactataaattTAAACTGAAGAAACACCTGAACCGTCACATGACTAATAAACATCTTGATGCAGACAAGATAAAATGGTTCAAGTGTGAGAAATGTGATTATAGATGTAAAAAGAATGCAGACCTGAAATTGCACATGATTTATAAGCATTTAAGTGAAAACGaaattaaatggtttaagtgcgagaaatgcgcctACAAATCTAAACGGCAGAGTAATCTGAAGAACCACCTGCGAATCAACCATGTCAACGAAAACGAAATTAATTGGTTTAGGTGCGAGAAGTGCGACTATAGATCTACATACAAGTCCAACCTGAAAGATCACATTAACAAACATCTGGATGTGGAAGAGATtaaatggttcaagtgcgagaaatgcgattaTAGATCCAAACAGAAGAGAAACCTGAACGATCACATGATTAATAAACATCTTGATCCAAACAAGATAAAacggttcaagtgcgagaaatgcgaacaTAAAACTAGACAGAAACATAACCTGCGCCTGCACGTAGTTAATGTACATATCACGAAAAAGTTTAGGTGCGAGCAGTGCAACTTTCAAACTAACCTCAAACACTGCTTGGAAGGGCACAAGATTGCCAAGCATCTAAACGAGGACAAGATCAAATGGTTTTGTTGCGATAAATGTGACTTCAAATGTAAATGGAAGAAAAATCTAAAACAGCATATGATGAGCATTAAACATCGAAATGAAGCCGAGATTGAATTGCTTCAGTGCGCGCAGTGCGGTTACAAAACTAAAATTAGGGATAATCTGAAACGGCACATATTTGTTGATCATTTTCTGTAA
- Protein Sequence
- MAEGFLVDFFDEVKEEIKEEVKEEWGEAEMDDANAPKEELIKVEEEIEIVEHPCNVDACRDLSVIGTFVPLKRNKSKHLTSHSEEKNEKIKWVYCYKCDYKTKQKSHLQRHITAKHLSEEEIEWFRCGKCDYKFKLKSNLKQHMIIHLDVEEIKWFRCEKCDYRCKKKANLKLHMICKHLSENEIKWFKCEKCAYKSKQQGGLKNHLQSNHVNENEINWFRCEKCDYRCKHKRCMNDHMTNKHLDADKIKWFKCEKCDYKFKLKKHLNRHMTNKHLDADKIKWFKCEKCDYRCKKNADLKLHMIYKHLSENEIKWFKCEKCAYKSKRQSNLKNHLRINHVNENEINWFRCEKCDYRSTYKSNLKDHINKHLDVEEIKWFKCEKCDYRSKQKRNLNDHMINKHLDPNKIKRFKCEKCEHKTRQKHNLRLHVVNVHITKKFRCEQCNFQTNLKHCLEGHKIAKHLNEDKIKWFCCDKCDFKCKWKKNLKQHMMSIKHRNEAEIELLQCAQCGYKTKIRDNLKRHIFVDHFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -