Pful025447.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004623.1:17234437-17236221[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.71 42 5.8 0.2 12 23 66 78 62 78 0.89 2 17 0.006 0.35 12.3 2.8 2 23 88 110 87 110 0.96 3 17 0.12 7.3 8.1 1.5 1 23 119 142 119 142 0.94 4 17 0.0012 0.068 14.5 0.9 1 23 151 174 151 174 0.94 5 17 0.00054 0.031 15.6 3.3 1 23 183 206 183 206 0.96 6 17 0.008 0.47 11.9 1.6 1 23 215 238 215 238 0.95 7 17 0.0039 0.23 12.9 0.7 1 23 247 270 247 270 0.92 8 17 0.00096 0.056 14.8 0.7 1 23 279 302 279 302 0.96 9 17 0.0042 0.25 12.8 1.2 1 23 311 334 311 334 0.94 10 17 0.00053 0.031 15.6 0.9 1 23 343 366 343 366 0.96 11 17 0.04 2.3 9.7 2.6 1 23 375 398 375 398 0.95 12 17 0.043 2.5 9.6 3.0 2 23 408 430 407 430 0.92 13 17 0.0043 0.25 12.7 1.9 1 23 439 462 439 462 0.95 14 17 0.0047 0.28 12.6 4.2 1 23 471 494 471 494 0.94 15 17 0.002 0.12 13.8 3.3 1 23 503 526 503 526 0.93 16 17 0.3 17 7.0 4.1 1 23 535 558 535 558 0.95 17 17 0.00044 0.026 15.9 1.0 2 23 568 590 567 590 0.92
Sequence Information
- Coding Sequence
- ATGGAAGCATTTGTAGTCGATTTTTATGATGAAGTCGAAGAGGAAGTTATCGATGAAGAAGGGGGAGGAGATAATGCAAAAAATTCAAGTGGCAACGAACGGGCTCTGGAAGAACAAGTCGAAgatgaaattgaaattaaaacTGAGGGACGATGTGACCTCAAAGTAGAGGTACCTTCGGAGACACAGACCGAACAAAAGGGAAGTCTGAAACGGCACATGATTACCATACATAGAAACGAAGACCAGATCAAATGGTTGGAGTGCGAGAAATGTGAGCTCAAAACCAAAAAGAAGGTACATCTGAACCGGCACCGAATCACTATGCATCGAAATGAGGATGAAATTGACTGGTTCCAGTGCGGGACATGCGCCTTCAAAACCAAATTTAAAGCTAGCTTGAAACAGCACATTTTTAATATACATCAAAATGAAGATGAAATTCAGTGGTTCCAATGTGGAAATTGCGACTACGAAACTAAAGAAAAAGATACGTTGAAACGGCACATATTTAATATACATCGAACTAAATATGAGATTCAGCGGTTCCAATGtgaaaaatgcgactacaaaactaaaGTAAAATGTAACTTGAAACGGCACATTATTAATATACATCGAAATGAAGATGAGATTCAATGGTTCCACTGCGAAACATGCGATTACAAAGCCAAAGAAAAAGGTACGTTGAAACGGCACATACTTAATATACATCGAACTGAAGATGAGATTCAATGGTTCGAGTGCGAAAAATGCGGCTACAAAGCCAAAGAAAAAGGTACGTTGAAACGGCACGTATTCAATATACATCGAACTGAAGATGAGGTTCAGTGGTTCCAATGTGGAAATTGCGACTACAAAACTAACGAAAGCTATACCTTGAAACGGCACATTATTAATATACATCGAAATGAAGATGAGATTCAGTGGTTCCAATGTGGAAAATGCGATTACAAAGCCAAAGAAAAAGGTACGTTGAAACGGCACATATTTAATATGCATCGAACTGAAGATGAGATTCAGTGGTTCCAATGtgaaaaatgcgactacaaaactaaaGAAAAAGGTACCTTGAAACAGCACATTATTAATATACATCTAAATGAAAATGAGATTCAATGGTTCCACTGCGAAAAATGCGATTACAAAGCCAAAAAAAAAGGTGTCCTGAAACGGCACATATTTAGTATACATCGAAATGAAAATGGGACTCAATGCTTGCAGTGTGCTAACTGCCATTACAAAACCAAATATAAATCTGTTCTGAGACGACACATAATTTTCAAACATACAAATCAAGATGAGATTCAGTGGTTTGAGTGtgaaaaatgcgactacaaagccaAAGAAAAATTTACCTTGAAACGGCACATGTTTAATATACATCGAAATGAAAAGGAGACTCAATGGTTCCAGTGTGCTAACTGCCATTACAAAACCAAATATAAATCTGATCTGAGACAACACATAATTTTCAAACATGGAAATCAAGATGAGATTCAGTGGTTCCATTGTGAacaatgcgactacaaagccaAACAAAAAAGTACCTTGAAACGGCACATATTTAATATACATCGAAATGAAGATAAGATTAATTGGTTCCAATGTGGAAATTGCCACTACAAAGCTAAAGAAAAATGTGCGTTGAAACGGCACACTATTAATATACATCGAAATGAAAACGTGACTCAATGGTTGCAGTGTGCTAACTGCGATTACAAAACCAAATATAAATCTAATCTGATACGACATATAATTTTCAAACATGGAAATCAAGACTAG
- Protein Sequence
- MEAFVVDFYDEVEEEVIDEEGGGDNAKNSSGNERALEEQVEDEIEIKTEGRCDLKVEVPSETQTEQKGSLKRHMITIHRNEDQIKWLECEKCELKTKKKVHLNRHRITMHRNEDEIDWFQCGTCAFKTKFKASLKQHIFNIHQNEDEIQWFQCGNCDYETKEKDTLKRHIFNIHRTKYEIQRFQCEKCDYKTKVKCNLKRHIINIHRNEDEIQWFHCETCDYKAKEKGTLKRHILNIHRTEDEIQWFECEKCGYKAKEKGTLKRHVFNIHRTEDEVQWFQCGNCDYKTNESYTLKRHIINIHRNEDEIQWFQCGKCDYKAKEKGTLKRHIFNMHRTEDEIQWFQCEKCDYKTKEKGTLKQHIINIHLNENEIQWFHCEKCDYKAKKKGVLKRHIFSIHRNENGTQCLQCANCHYKTKYKSVLRRHIIFKHTNQDEIQWFECEKCDYKAKEKFTLKRHMFNIHRNEKETQWFQCANCHYKTKYKSDLRQHIIFKHGNQDEIQWFHCEQCDYKAKQKSTLKRHIFNIHRNEDKINWFQCGNCHYKAKEKCALKRHTINIHRNENVTQWLQCANCDYKTKYKSNLIRHIIFKHGNQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -