Pful017644.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- Zfpm1
- Assembly
- GCA_963924575.1
- Location
- OZ004620.1:32413490-32416180[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.67 11.4 0.5 1 23 419 442 419 442 0.90 2 13 0.039 2.3 9.7 1.7 1 23 547 569 547 569 0.98 3 13 7.1e-05 0.0042 18.4 1.8 2 23 572 593 571 593 0.97 4 13 0.0041 0.24 12.8 1.0 1 23 599 621 599 621 0.98 5 13 6.4e-05 0.0037 18.5 5.3 2 23 628 649 627 650 0.95 6 13 7.3 4.3e+02 2.6 2.2 6 23 664 681 662 681 0.94 7 13 0.00017 0.0099 17.2 4.5 2 23 687 709 686 709 0.96 8 13 0.041 2.4 9.7 0.0 2 23 724 744 723 744 0.96 9 13 0.00032 0.019 16.3 1.3 1 20 750 769 750 772 0.92 10 13 0.00022 0.013 16.8 0.3 1 23 780 802 780 802 0.99 11 13 0.0015 0.089 14.2 3.7 1 23 808 830 808 830 0.98 12 13 8.4e-07 4.9e-05 24.4 4.0 1 23 836 858 836 858 0.98 13 13 0.00076 0.045 15.1 7.0 1 23 864 886 864 887 0.96
Sequence Information
- Coding Sequence
- ATGGATTCAAGCAATATCTCGTGTCCTGTGTGTACTCTGTACCTCAGGCCTGGAATTACTCTGAAAAGTCATCTCACCAGCCACCCCAAGCAAAAAGTCATCGAAGCTTTGGTTCGGTTAGCTGAAACCGAAGATGACAAGGTATCGCCCGAGCACACGTCCACTGCAATAGCGAATCAGTCATGGAATCAAGCCAATTTTCCCCCGAACATGCCACCGGGCAACCACGTCTTTATCTATCAGCAAAGCATGAGTACGTCCAGTCCTCAACAGGGGGTGCTGAACGTCAATCCGTTAACCCAGCAATACGTAATTCCAGCTGTTTTAAACCCGCAAATGATGCCTCCGTATATTTACCAACAGCAGCAAGTTATTATGTCGGGATCGTGCTTGAATCCTATGCGAACGCTTCCATTCGAATTGCCTCCTTCCACATGTACGGTCGGGGAAATTAGCCCCTCACATTCTGATTCGAGCAGCGAAAGTGACGAGGCTAAAGTCGACGAGGAACAAGGTGATCCAATTAAAGATGATTGTGAAGTACAGGAAAATATCAACGATTCACTCGATATGGAAGTATACGAAGTTGTTGAACCTGAGAATCCTGAAAGCCCCAAACCTGATGACTTAATTGAGTTGAACAAAGCATGTCAGACCCAGAGTGTCGAGCAGGAGGAGGCACCACCCCCCAAGGATAACGAATCATTTTATTTCGTGAGTGAAACAGATCCGGTTTATTCATCAGTCGATCAGAATAATTACCAGTCCAGTACTATATACACGTCTTCAAATATGGATTTTGTCAATATGGATGGTATGCATATGGTGATCAATGATATGAACGACTTTTCACCCCAACAAATGATCTCGCATGTTGAGAATTTCGAGCATAGCCCTAGTGATCGACCTGGAGTGCTGATCACTATTGGGGGTATGGTTGATGAGCATAGGGAGGAAAGTATGTCGACTGAAAGCTCAAACGTCAATATTCGTACTGACGAACGAATGCCACCAAGGGGTGAGTTGTCGGGGCAGGAAAGTATCGATGGTGCTAGTGACATCACTTGGAATCGAGTACAGTATGATGGTAGTTCAGGTACTTCGTATGATTTGGTTGCCAGAGAATCCTGGGAGGCTTCGGATAGTTCCGATATTGAAATACCACCCTTGCAAAGCAGGGTGCCACCCCCAGTGGATTTTAACGAGGATAACGACACTCCGACAGTGGTAAGCTTTAGTGGACCTCCGCTGAATTTTAAATGCCCTTTATGTGAAGAAGCATTTACTTCATCGAGGGAACGAAAGGAACATGAATCTGAAAAACACCCGGAGAAGACGCGCAAAATCAACAGCATAGGGTTGGATATAGGAAAAAAGAAAGTAAAGAAACTGGTGGTTAAAATGAAATCTGATAAAACCGAGACTAATTTCGATAATGTGTTTACTAATAAGCTTAAAATCGAGACGTCTACCAAACCAGATCCTGAGAGCAGCTTAGAGGAGCATGAGATCAAACCTGATGATGCTGTACAACCAGATTTGAAAACAGTTTGTTCGATTTGCGATTGCGTTTTGTTGAATACGAAATCACTGAGAGAACATAAAGCGCAAGTGCATAACATCACAGCTCAGACTCGTCACAAATGCACGACTTGCGAGGGTGTTTTCCCGAACGATTACAAGTTCACTGAGCATTTAAAAGTCCACCCTTTGGAGTGTAAAATGTGCGGGCGATTATTCTACAGAAGGCAGAACATGCAACTTCACATGCGCAGACACTTAGGGATTAAACCCTACAAATGCGAGGTTTGCGAAAAATCGTTTTTGACAAAGCAAAAACTGGATGAACACAGAAACATTCACACAGGGGAAGCACCAATTAAATGCACCTTATGCGATGAAACGTTTAGGCGTCATTCGAATCTCGTGCAACACAGAAACCGTCACCACCTCAATGTCAAAAAGAAACTGAAAGACTACATTTGCTTCTGCAAGGAAATCTTtcattctaaaaaaaaattggcgtgGCACAAGGAAATCCACGATTCCAAACCGAAATCGTGCGCTCACTGCAACGAGAAATTCATACACATGTCGAGTTTGACACGTCACATGCGGCGGGCGCATAACGACAGATTCCTGCCCAAGGGCAAAAAATCCGAAAACGTGGAATGCCCCATTTGCAAGGGGGTGTATCTCAAATCGTCCCTGGAAGTTCACATACGCAACCACAGCGGCCAAAGGCCATACTCGTGTCTCATCTGCAACAAGGATTTTACCACCAAGTGGAACCTGAAGTTGCACAAATGGACGCACGCGTCCCGCGTTTCGAAACCCTTCAAATGTGATCAGTGCAAGGGCGCCTTTATTAGGGAGTCCGATTTTGTGGCGCACATGAATTCCCACAAAAGCATAAGGCCGTACACTTGCAATTACTGCGGagctcaatttattcgaaagtACAACTGTCAGAGACACGTGAAGGAGCACGAGAACGAAAAGATGTTTAGTTGTAAAGTGTGCGGAAAGTCCTTCCACCGCTCGTATTATCTTAAAGATCATATGAGAATCCATAGTGGGCTCAGACCGTATTCTTGTCATATTTGCGGGAAGACTTCCACCACTAAATCTAATCATAACAAGCACATTCAAATACATCATGCTAGGGAACCTGTGAGCACTGAAAATTAA
- Protein Sequence
- MDSSNISCPVCTLYLRPGITLKSHLTSHPKQKVIEALVRLAETEDDKVSPEHTSTAIANQSWNQANFPPNMPPGNHVFIYQQSMSTSSPQQGVLNVNPLTQQYVIPAVLNPQMMPPYIYQQQQVIMSGSCLNPMRTLPFELPPSTCTVGEISPSHSDSSSESDEAKVDEEQGDPIKDDCEVQENINDSLDMEVYEVVEPENPESPKPDDLIELNKACQTQSVEQEEAPPPKDNESFYFVSETDPVYSSVDQNNYQSSTIYTSSNMDFVNMDGMHMVINDMNDFSPQQMISHVENFEHSPSDRPGVLITIGGMVDEHREESMSTESSNVNIRTDERMPPRGELSGQESIDGASDITWNRVQYDGSSGTSYDLVARESWEASDSSDIEIPPLQSRVPPPVDFNEDNDTPTVVSFSGPPLNFKCPLCEEAFTSSRERKEHESEKHPEKTRKINSIGLDIGKKKVKKLVVKMKSDKTETNFDNVFTNKLKIETSTKPDPESSLEEHEIKPDDAVQPDLKTVCSICDCVLLNTKSLREHKAQVHNITAQTRHKCTTCEGVFPNDYKFTEHLKVHPLECKMCGRLFYRRQNMQLHMRRHLGIKPYKCEVCEKSFLTKQKLDEHRNIHTGEAPIKCTLCDETFRRHSNLVQHRNRHHLNVKKKLKDYICFCKEIFHSKKKLAWHKEIHDSKPKSCAHCNEKFIHMSSLTRHMRRAHNDRFLPKGKKSENVECPICKGVYLKSSLEVHIRNHSGQRPYSCLICNKDFTTKWNLKLHKWTHASRVSKPFKCDQCKGAFIRESDFVAHMNSHKSIRPYTCNYCGAQFIRKYNCQRHVKEHENEKMFSCKVCGKSFHRSYYLKDHMRIHSGLRPYSCHICGKTSTTKSNHNKHIQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -