Pful019777.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004621.1:20957637-20959743[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9e-05 0.0011 20.1 3.4 2 23 142 164 141 164 0.97 2 13 0.56 33 6.1 0.9 1 23 179 200 179 200 0.94 3 13 0.00017 0.0098 17.2 0.1 2 23 218 239 217 239 0.94 4 13 0.22 13 7.4 2.1 2 23 259 280 258 281 0.93 5 13 0.0001 0.0059 17.9 2.1 2 23 293 314 292 314 0.97 6 13 6e-05 0.0035 18.6 4.0 1 23 346 368 346 368 0.97 7 13 0.014 0.82 11.1 0.6 3 23 381 402 381 402 0.90 8 13 2.1e-05 0.0012 20.0 1.3 1 23 424 446 424 446 0.98 9 13 0.00034 0.02 16.2 2.7 3 23 460 481 459 481 0.97 10 13 0.0064 0.38 12.2 1.0 2 23 499 520 498 520 0.93 11 13 0.0068 0.4 12.1 0.2 1 23 532 555 532 555 0.95 12 13 0.011 0.64 11.5 0.6 2 23 563 584 562 584 0.95 13 13 1.5e-05 0.00089 20.5 0.7 1 23 601 623 601 623 0.98
Sequence Information
- Coding Sequence
- ATGAAATCCGTCTTTGACGATGACCGTAATGAATTTAAATTACAACAGAAGATTAGTGAACTGCTGAGCGTTGAGGTAACAAACGAGGACAGATTTCCTACAGTAATATGCAACACTTGTTGGGAAAAAATCCAAGactggcaattatttaaatCGAGGTGTGCTGAAAACCAGGCGAAATTAGAGCAGCTATGGACACAGAAAACGTCTGACCCTTATTTACTCTCAGAGTGCGTGCAAATTAAAGACGAGCCTTTAGATGACGACGACGTTTTTAATGTAcaaactgattttgatgaaattgctGTTAAAGCAGAAGAAGGACTGTTACCTCTCCCTTTATCACCAGCCTTAGCACCTCCAATACTGGAGCAGGAGAACAACAACAATCCTCCCAAAGTTCCCCCAAAAATCGATCGTAAAACTTGTCCGATTTGCGGTAAAAAATTCACACAAGCTTCCAGTTGCCGGCGTCATCAAAAAACCGTTCACAAAAACGATCTAGAAACTCCTCGAGTTAAATCAACATTCCTCTACTGTTGTCCCGATTGTAAAGACATTTTCAATTCAACCGATTGGGAGAAGCATAAAGCCATACATAAAACCGAACCGAAAATCGTGGCGAAGGCCAGTAAGCCGCAGAAGAAAGTTGTGTGTCAAATTTGCGACAAGGAATTCTCCAGTACGTATTTGTTAAAACAGCACGCAATTCTGCATGAAACTATGCCGGTTTTGGAAAATTCCGTCAATCCTGACACCGGTAAAAAAATTACCTCTTGTGAGGCTTGTAACAAGTTTTACGCAAGCCGAACGGGGCTCTTAATGCACAACAAGAGGCACCATCCCGATCTAACTGTAAATCCTGAACTTCCAAAAACTTGCAAGTACTGCGATAGAACGTTTAGAACAACTCCTGCACTATTAATGCATACGAGAAAGCACGAGAGAGAACCTCGGAGGTATTCTCAACCACCGAAATTATTACCAATGGAGGAAACTCCGAAGAAAAGCGAGCAGAGGAAATCAGAATCTCTCCATTCCTGCAAAACTTGCCAGAAAATCTTTTCTTCAAAGCAAAATTTAACAAACCACGAAAAAGTTCATTTGAGTCCTGTAACGAGAAACGTTACGAAAGTGTGGTGTGCTCTTTGTCACATCTCTTTCAATACTGTGGACGAGCTTAAAAAACACACGGATGCAGGGCATGAAAGTGCTATGCCCGTCTTGCAAGAGGCGGAAAACATAGTGGAACCCAAAAAAACTGCGGCGTTTACTTGTGAAATCTGCTTGAAAGTATTCGCAACAAACAGAATGTTAAAGAAGCATAAGAGAGAACACGAGGCAATGATTGAAGTTAAAATGAACCGCAACGTTTTCTGTAAACATTGCAGAGTTGTTTTCTCTAGTCCGCAGGAGTTTCAAAATCACATGAAGAGGGAACATGATGAAACCCAAGGGAGGAAGAAGAAATCGAGGAACGATAAAGGGAAGGACCCCTGTAAATTGtgtaagaaaatatttaagtCTCTGAAGGCGCTGCACATTCACGAGAGCTGGCACAGGAGGAAGGACGCTGTGAAAGAGCTCAAGAAGTTCCAGTGCCAGAAATGCGACGAGTTTTTGGCCAATGAGACTGGCCTGAAAATTCATATCTTGGAGAAGCATAGAATAAAGGAGCAGAAGAAGCGTTGCCCTATTTGTTTCACCGTTTTCTCTACCCTGGAAGCGTACGCGTATCACAAAAAGTTCCACAAGACGATTGATAGTTTAGAGGAGGATCTTAAAAGTAACTTTAGGGAGTTCAAGTGTTCGCAGTGTGACCGCACTTTTGACAAGGAGGCTTCTCTGAATATACATTTGAAGGTGCACGAAAAACATTTAAATCTTGGTGGATCGGCTGTTCATTCATCTTAG
- Protein Sequence
- MKSVFDDDRNEFKLQQKISELLSVEVTNEDRFPTVICNTCWEKIQDWQLFKSRCAENQAKLEQLWTQKTSDPYLLSECVQIKDEPLDDDDVFNVQTDFDEIAVKAEEGLLPLPLSPALAPPILEQENNNNPPKVPPKIDRKTCPICGKKFTQASSCRRHQKTVHKNDLETPRVKSTFLYCCPDCKDIFNSTDWEKHKAIHKTEPKIVAKASKPQKKVVCQICDKEFSSTYLLKQHAILHETMPVLENSVNPDTGKKITSCEACNKFYASRTGLLMHNKRHHPDLTVNPELPKTCKYCDRTFRTTPALLMHTRKHEREPRRYSQPPKLLPMEETPKKSEQRKSESLHSCKTCQKIFSSKQNLTNHEKVHLSPVTRNVTKVWCALCHISFNTVDELKKHTDAGHESAMPVLQEAENIVEPKKTAAFTCEICLKVFATNRMLKKHKREHEAMIEVKMNRNVFCKHCRVVFSSPQEFQNHMKREHDETQGRKKKSRNDKGKDPCKLCKKIFKSLKALHIHESWHRRKDAVKELKKFQCQKCDEFLANETGLKIHILEKHRIKEQKKRCPICFTVFSTLEAYAYHKKFHKTIDSLEEDLKSNFREFKCSQCDRTFDKEASLNIHLKVHEKHLNLGGSAVHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01278408;
- 90% Identity
- iTF_01278408;
- 80% Identity
- -