Basic Information

Insect: Pycnomerus fuliginosus
Gene Symbol: ham_2
Assembly: GCA_963924575.1
Location: OZ004623.1:12650821-12668551[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00013 0.0074 17.6 0.8 1 23 150 173 150 173 0.96

2 8 6.4e-09 3.7e-07 31.1 0.8 1 23 179 201 179 202 0.96

3 8 1.3e-06 7.6e-05 23.8 2.4 1 23 208 230 208 230 0.95

4 8 7.5e-05 0.0044 18.3 4.1 1 23 236 258 236 258 0.99

5 8 0.0025 0.15 13.5 0.7 2 21 266 285 265 286 0.95

6 8 1.3e-08 7.6e-07 30.1 1.2 1 23 577 599 577 599 0.99

7 8 2.4e-06 0.00014 23.0 1.6 1 23 605 628 605 628 0.97

8 8 1.9e-05 0.0011 20.1 3.4 1 23 634 656 634 656 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00013	0.0074	17.6	0.8	1	23	150	173	150	173	0.96
2	8	6.4e-09	3.7e-07	31.1	0.8	1	23	179	201	179	202	0.96
3	8	1.3e-06	7.6e-05	23.8	2.4	1	23	208	230	208	230	0.95
4	8	7.5e-05	0.0044	18.3	4.1	1	23	236	258	236	258	0.99
5	8	0.0025	0.15	13.5	0.7	2	21	266	285	265	286	0.95
6	8	1.3e-08	7.6e-07	30.1	1.2	1	23	577	599	577	599	0.99
7	8	2.4e-06	0.00014	23.0	1.6	1	23	605	628	605	628	0.97
8	8	1.9e-05	0.0011	20.1	3.4	1	23	634	656	634	656	0.99

Sequence Information

Coding Sequence: ATGCTCAAAATGAGGCAACGCGTTGTGGTTTGTTTTGTGGTTGTCTCAGGATCGGGAGTCAGAGGCTGGCTTGACGGATCCTCTGAGGAGCGAAACTGGCTGAAATTTATCCGAAGCAACGAGGACAAAAACGCGGTCAACATGCGATACTCCCTTCAAGCCGGACAGTTATGGTACGAAACTTGCATGGACATCCCCAGCGGGACGGAGTTGGTCCTCTGTCCGCGAGAGCCGTTAAACTTGCAGGACATGTACGGCGATTCAACTTCGGCGGATGAAAAATCGGATCGAGAAACAGCCTCCCAACATAGCGGTACCGTCGATGATCGCGAAGAAGACGACGAAGACGAATTCGAAATCCGCTGTTGCGTGTGCGACCAACCCCACAACGACGTTGATAAACTAGACGAACACCTTATCATCAAGCATAACTATAGGAAGGATGACTATAGATGTGATTACTGCCCCAAAGCTTACTCATATCGACCATGTCTCATAAGGCATCGAGCTGTCGCTCATGGTGAACTTCGGAAATATCCCTGTGAGAATTGTCCAAAGATTTTCACCGATCCAAGTAATCTCCAGAGACATATTCGTACCCACCACGTCGGAGCTCGATCGCACGCTTGTCCAGAGTGTGGAAAAACGTTCTCCACTTCTTCAGGTTTAAAACAGCACACCCACATTCACTCATCCCACAAACCTTTCCAGTGCGAAGTTTGCTTGAAGGCCTACACGCAATTTTCCAACCTGTGTCGGCACAAGCGCATGCACGCCGATTGTCGAATGCAGATCAAGTGCGTCAAATGTGGTACGTCCTTCTCCACAGGTACATCTCTGTCGAAACATAAACGATTTTGTGATTCTACTTCAGCGCCTTCTTTGGGTTCTCCTCAGCAATTATCGATGGCCGGCAACAACCCGTTCTCGATGTATCGACCACCCACCTGTCCGCCTTTACCCTTCTTTCAGACCCATTTCCCTCCTTACACTCAACTTTTCCACCCCGCCGGGCCTCATCCGCACTCTTTTATAAACCCGCTACTGTTTCCTTTACCAAAATTGAAGACTGAAGAAGAAGCATCACCGCCAAAGAGGATGAGGCTTTCAAGCCCCGAGAGATGTACACCTCCACGTGTACCGTCAGTTTCTGCCAAAGTCAGTCCACCAACAGCTGAAGAAGCGAACTTAACACCATCGCCAGCTAGACCAAATCAAATCCTGTCAAATCCTCGCGACCAAATCGACGAGGATAATTCTCCAAAGGATTTGTCGAGGCGTggagaaaaaataaaaagaccTTCATCTATCAGTAGCGAAGAAGGCGACCAACCCTTAGATCTTACTGTTCCTAGAAAAAGGTCGCGTTTAGTCCCCGAGAGAGcaataaaacacgaaattcgAGACCTAATACCCTCACCGAaaaatcacgaaaaagtggaagTCGTAGATCTAGAAGAGGAGAAGAAGGAAATGTCAACTCCACCAATGGCTTGTCCGAGACCGATCCATCCCCCGATCCATCCCTCGATCCACCCCTCGATGTTGCTAGAAATGTACCGACCGAATTTTCGAAACTTCCAGCAAAACAGTGATAGACTGATGCCTTTTGAACCCCCACGATTCCCTTTTCTGCAACCGCCAAGAAGTTTCGAACTACTTCGCCCCAACTTGCAGAGTTTGAAACCCTACGACATGATGCCACAACCTGGAAAAATGAAGGATCGATATTCTTGCAAGTTTTGCGGAAAGGTCTTTCCGAGATCTGCGAATCTAACGAGGCACTTGCGGACCCACACAGGAGAGCAGCCGTATAAATGTCGCTATTGTGAAAGATCTTTCAGTATTTCCAGTAATTTGCAAAGACACGTGCGAAATATCCACAACAAAGAGAAACCGTTCAAGTGTCCTCTTTGCGAGAGATGTTTCGGACAACAGACCAACCTTGACAGACATTTGAAGAAACACGAAGCTGATGATGGCAGTGGAGTTGTGGCTGTGGCGGATTCTCCAGGAAGCAGTAACGAGAACGAACGAGAAGATGCGTGTTTCGATGAAATTCGAACGTTTATGGGAAAAGTTACTTATTCGGCAGATTCCTACAGCCAAAGTAGAATCTTCAATCAATCTTCAAACAGCGTTATCGATGTTGTGAAGGAGGATGAAGATTCCGAAGCGGAAGAAACTCCCCCGGAAGATTTTTCAACGAAACAAGAAATGGACGAAGTGTTAAATAATAACGAAGCTATTTTAGTGTAG
Protein Sequence: MLKMRQRVVVCFVVVSGSGVRGWLDGSSEERNWLKFIRSNEDKNAVNMRYSLQAGQLWYETCMDIPSGTELVLCPREPLNLQDMYGDSTSADEKSDRETASQHSGTVDDREEDDEDEFEIRCCVCDQPHNDVDKLDEHLIIKHNYRKDDYRCDYCPKAYSYRPCLIRHRAVAHGELRKYPCENCPKIFTDPSNLQRHIRTHHVGARSHACPECGKTFSTSSGLKQHTHIHSSHKPFQCEVCLKAYTQFSNLCRHKRMHADCRMQIKCVKCGTSFSTGTSLSKHKRFCDSTSAPSLGSPQQLSMAGNNPFSMYRPPTCPPLPFFQTHFPPYTQLFHPAGPHPHSFINPLLFPLPKLKTEEEASPPKRMRLSSPERCTPPRVPSVSAKVSPPTAEEANLTPSPARPNQILSNPRDQIDEDNSPKDLSRRGEKIKRPSSISSEEGDQPLDLTVPRKRSRLVPERAIKHEIRDLIPSPKNHEKVEVVDLEEEKKEMSTPPMACPRPIHPPIHPSIHPSMLLEMYRPNFRNFQQNSDRLMPFEPPRFPFLQPPRSFELLRPNLQSLKPYDMMPQPGKMKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHEADDGSGVVAVADSPGSSNENEREDACFDEIRTFMGKVTYSADSYSQSRIFNQSSNSVIDVVKEDEDSEAEETPPEDFSTKQEMDEVLNNNEAILV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -