Pful029233.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004625.1:12015547-12017070[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00012 0.007 17.6 1.4 1 23 91 114 91 114 0.95 2 12 0.025 1.5 10.3 2.0 2 20 127 145 127 147 0.93 3 12 0.00014 0.0085 17.4 2.4 1 21 158 178 158 179 0.96 4 12 2.2 1.3e+02 4.2 0.6 1 19 192 210 192 213 0.87 5 12 2.4e-05 0.0014 19.9 0.3 1 23 225 247 225 247 0.98 6 12 6.3e-06 0.00037 21.7 0.2 3 23 255 275 254 275 0.97 7 12 0.00022 0.013 16.8 3.1 1 23 281 304 281 304 0.96 8 12 2.1e-05 0.0012 20.0 0.5 3 23 314 334 312 334 0.98 9 12 1.8e-05 0.0011 20.2 0.7 1 23 340 362 340 362 0.95 10 12 2.8e-05 0.0016 19.7 1.6 1 23 368 391 368 391 0.97 11 12 4.4e-05 0.0026 19.0 5.4 3 23 407 427 405 427 0.96 12 12 0.00012 0.007 17.6 2.7 1 23 433 456 433 456 0.91
Sequence Information
- Coding Sequence
- ATGGACCGTCAATGCAGTGTTTGTTTGAGATTTTTCAAAGAATTCCAAAATATCTGCACTTTTAACAACAGGAACGAGCAATGGTTGTCCCTCCTTAAAAGCGTCGTCCCCGAAGTGGATTGGCTCGAGACTTACAAAATATGTCATTTGTGTGCATCTGAGCTGGATCGTGTGTCTGCATTTCGCAAGATGTGCATACTCCTCGATGAACAACGCAAGAGCTTCATTAAAGTCATCGAAGAAACCAAGGAAGAAACCAAACCTGAACTCTTCAAGTGTTTCCACTGCAACGAGGATTTCACAGACAAGGAATTGTTGGCTGCGCATATCACCCAAACACACACGAAATCCATCAAACTCGAAGAAAACACCTTCAATCGATGCAGTAAATGCGGTAAAAAGTACAATCTTTTAAAATCTCTCAAAAACCACAGTAAATTCTGCAATGGACCAGTTGTAACAAACCCACAGTTTCAATGTGAAAACTGTTCAAAGTTTTACACCACCAAAAAAACTTTACGAGTGCATCAAAAATCCTGTGAGCCTAAAGCAATTTGTGAGAAAACTCGCAGTTTTTCTTGTGAAATTTGTGGTGACAACTTTTCTTTGCCAAGGCAAGTTTTTGATCATTGCGAGGATGTGCACAACATTGAGAGGAAACTAGTTAAGCCCTACACTTGCGACATCTGCCCTGTAAGATTTGTGTCTTCGGCAAATTTAATTCAGCATAAAAAGTACCACAATGGGACTCGGTCAAACATTTGCAGTATTTGCGGTAAAAGTTACATCACGAAAAGTGACTTAACTGTTCACGAGTACACTCATTTTAACAAGAGGAATCATAAATGTAAATTCTGTGATAAAGCATTCAACACCAATCAAAATAAACGAACTCACATTCTGGTAGTACACACGGAGCCAGGTCTGTGGAAGTATGGATGTGATCAGTGTGGAAAAAAGTTTCCTTTGAAATCCGGTTATGAGCAACACATGAGGAGACACGCAGGGGATAAAAGATTCCCGTGTCAGATTTGCGAGAAACTTTTCATCAGTAAAAGTGAGCTTAAAAAGCACATGGTGTTTCACTCGAAAGCCCGACCGTTTGAGTGTTCGCACTGTGGTAAAAGCTACAAAGAGCAGGGTGGGTACAGAATACATTTGAAGAAGGCTCATGGGGTGGGGGATGCAAAAATTCCAGTTAGAGTCAAGAAACATCTTTGTGATGTGTGTTCGAAAAGTTTTGTCGACAGAAGCAAGCTGAAGAGGCATTTGTGCACTCACACAGGGGAGAAACCGTTTTTGTGCAATAAGTGTGACAGGAAATTTGCAGATTCGCATCAATTTAAGCAGCACATGACAGCTGTTCATCGCGAAGAAAAAGACGCATTTGATGGTTCGTTTAATTTTAGGCAGGAGACCAAAGTGGAAGTGGAAACTTTAGTTTATACTACACTACAGTCTTTGACGCCTATTGTATAA
- Protein Sequence
- MDRQCSVCLRFFKEFQNICTFNNRNEQWLSLLKSVVPEVDWLETYKICHLCASELDRVSAFRKMCILLDEQRKSFIKVIEETKEETKPELFKCFHCNEDFTDKELLAAHITQTHTKSIKLEENTFNRCSKCGKKYNLLKSLKNHSKFCNGPVVTNPQFQCENCSKFYTTKKTLRVHQKSCEPKAICEKTRSFSCEICGDNFSLPRQVFDHCEDVHNIERKLVKPYTCDICPVRFVSSANLIQHKKYHNGTRSNICSICGKSYITKSDLTVHEYTHFNKRNHKCKFCDKAFNTNQNKRTHILVVHTEPGLWKYGCDQCGKKFPLKSGYEQHMRRHAGDKRFPCQICEKLFISKSELKKHMVFHSKARPFECSHCGKSYKEQGGYRIHLKKAHGVGDAKIPVRVKKHLCDVCSKSFVDRSKLKRHLCTHTGEKPFLCNKCDRKFADSHQFKQHMTAVHREEKDAFDGSFNFRQETKVEVETLVYTTLQSLTPIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -