Pful024544.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004623.1:6089537-6091223[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.009 0.53 11.7 0.3 1 23 29 51 29 51 0.98 2 15 0.0059 0.35 12.3 0.3 2 23 57 79 57 79 0.96 3 15 0.02 1.2 10.6 2.8 1 23 85 107 85 107 0.98 4 15 0.0017 0.098 14.0 0.6 1 23 113 135 113 135 0.97 5 15 0.00051 0.03 15.7 1.0 1 23 141 164 141 164 0.96 6 15 0.00039 0.023 16.0 2.0 2 23 171 192 170 192 0.97 7 15 0.032 1.9 10.0 2.5 1 23 197 220 197 220 0.97 8 15 0.00056 0.033 15.5 1.3 2 23 224 245 223 245 0.97 9 15 5.2e-05 0.003 18.8 2.7 2 23 253 275 252 275 0.95 10 15 1.1e-06 6.3e-05 24.1 2.9 1 23 282 304 282 304 0.98 11 15 0.00017 0.01 17.1 3.8 1 23 308 330 308 330 0.97 12 15 6e-06 0.00035 21.7 0.1 1 23 336 358 336 358 0.96 13 15 0.00079 0.046 15.1 1.8 1 23 364 386 364 386 0.95 14 15 5.4e-05 0.0032 18.7 2.2 1 23 392 414 392 414 0.99 15 15 0.006 0.35 12.3 2.9 1 19 420 438 420 440 0.97
Sequence Information
- Coding Sequence
- ATGAACTGGGTCGAAATAAAACAGGAATTTGACTATGCCGAAAATGTAAAGAAAGAAGAAATTAAAGACGATGATACAACTAGTTATAAATGTGCTGTCTGCCCTGAAGTGTTTAAAATATTTGTGGCATATCGAATACACAGGAAACAGCATTTCGTTGCAAAACGAACGTGTCAGATTTGCAACATCGTTTTCAGGAATATGGGAGAATTTATTGGCCACACAAATAAAATGCACCTAGGAATCAAACCATTTAAATGTGTACAGTGTGCAAGGAAATTTCATGCCAAACAGGACCTTTTGTTGCATATGAGGTACCACTCCGGAGAAAAAAGGTACCGATGCGAACAGTGTAGAGATAGCTTTAAATACTTGGAAGCCCTAAGGTCCCACATGGCTTTACACAATGGCATTAAGGAGTTTTCATGTCAGATTTGTGAAATGAAGTATACCAACGTACAAAACTTAAGAAATCATTTATCTTCCTCCCATGGACAAGAAGTAGAAATCAAATGTGAGCTTTGCCAGAAAATATGCAATACAGAAAGAAGTTTACAAGTCCATCTAAGATCTCATACTGAACTGACCTTCCCTTGCGAATATTGCAATTGCATACAAACCTCCTTATACAGACTTAAACGCCACATTCGACGAGCCCACAGCCCAAATAAATGTGAAGAATGCagtgaaattttctacaacagGACATTGTATACCAAACATATAAAACAACACATAGAGGACAACAAAGATCTACACTGCACATATTGTGGCAAACtattcaaaaaagaaaaaaatctcACTGAACACATCAGACTGCAGCATAAAAGCGACGGGGTTGCTCACAAATGTGATATTTGCAATAAGGAGTTTATAAATAGATCACTTCTCAGGAATCACATTAAAAAGCACGACAAATGTTTTAAGTGCAAAACCTGCAATAAGTTGTTTAGCTCAAGACACAATCTTGAGGTACATTCTGTTACTCACAGTGGACAGAAGAATTTTAGCTGTGAGATATGTGGGAAAGCGTTTTCTACAAAAACTGGCGTCAAAAACCACATTGGTGTTCACTCTAGCAGTAAAAATTACTTATGTGATCTATGTCCAAAGTCTTTCAAAAGCCAGCGAAGGCTCTATTCTCATAAATTATCGCATGTCTCTGAAGAAAAGTTCCAGTGTAATGTATGTGAGGCGAAGTTTAAGATGAAACAATATTTAAAGTCTCACATGATGAGGCACTCTAACGTTAAAGAATATGAATGTAAGGCTTGCAATAAACGatttaaatataaaaaatcaTGGAAAAAGCATTCCACACATGATAAATAA
- Protein Sequence
- MNWVEIKQEFDYAENVKKEEIKDDDTTSYKCAVCPEVFKIFVAYRIHRKQHFVAKRTCQICNIVFRNMGEFIGHTNKMHLGIKPFKCVQCARKFHAKQDLLLHMRYHSGEKRYRCEQCRDSFKYLEALRSHMALHNGIKEFSCQICEMKYTNVQNLRNHLSSSHGQEVEIKCELCQKICNTERSLQVHLRSHTELTFPCEYCNCIQTSLYRLKRHIRRAHSPNKCEECSEIFYNRTLYTKHIKQHIEDNKDLHCTYCGKLFKKEKNLTEHIRLQHKSDGVAHKCDICNKEFINRSLLRNHIKKHDKCFKCKTCNKLFSSRHNLEVHSVTHSGQKNFSCEICGKAFSTKTGVKNHIGVHSSSKNYLCDLCPKSFKSQRRLYSHKLSHVSEEKFQCNVCEAKFKMKQYLKSHMMRHSNVKEYECKACNKRFKYKKSWKKHSTHDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -