Pful008684.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004618.1:15134868-15137144[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.13 7.5 8.1 0.8 3 23 30 51 29 51 0.97 2 21 0.0091 0.53 11.7 3.3 3 23 66 86 65 86 0.98 3 21 0.0016 0.093 14.1 0.1 2 20 89 107 88 110 0.95 4 21 0.0027 0.16 13.4 0.1 1 23 115 138 115 138 0.95 5 21 4.3 2.5e+02 3.3 0.5 1 23 144 166 144 166 0.93 6 21 1.9e-05 0.0011 20.2 1.3 1 23 172 194 172 194 0.98 7 21 0.00039 0.023 16.0 2.1 1 23 200 223 200 224 0.94 8 21 1.9e-05 0.0011 20.2 1.9 1 23 234 257 234 257 0.96 9 21 0.00011 0.0067 17.7 1.1 2 23 266 287 265 287 0.97 10 21 0.085 5 8.7 3.2 3 23 295 315 294 316 0.94 11 21 0.0009 0.053 14.9 3.7 2 23 372 393 371 393 0.97 12 21 1.2 72 5.0 1.1 1 23 410 433 410 433 0.96 13 21 1.5 88 4.7 3.7 1 23 437 460 437 460 0.88 14 21 0.048 2.8 9.5 0.2 1 23 466 489 466 489 0.97 15 21 0.13 7.5 8.1 1.0 1 23 495 517 495 517 0.90 16 21 9.6e-05 0.0056 17.9 0.5 1 23 523 546 523 546 0.92 17 21 0.11 6.2 8.4 0.5 2 23 558 580 557 580 0.93 18 21 0.00063 0.037 15.4 0.5 3 23 593 613 591 613 0.95 19 21 5.7e-05 0.0033 18.7 0.9 1 23 619 641 619 641 0.98 20 21 1.9e-06 0.00011 23.3 0.8 1 23 647 669 647 669 0.98 21 21 0.16 9.3 7.8 0.1 1 22 675 696 675 696 0.95
Sequence Information
- Coding Sequence
- ATGGACGAAGTAATATACATAGACGTGATTGATGAAGTACCAAAAAAGAAGAGAAAAACCAAGCCCACGAAACGTCAGCGCACCCTATGTGAACACTGCGGGAGCATGTTCCTCACGCAAGAGTCTTACAATAACCATGTCATGAGCGTGCACAGCATGATGAAGGGGTTCAGCCCTCTCGACATCAAAGTTTTGTGCCCTCATTGCGGACTATCCTGCCCCAATGGTAGATCTTTCAAGCGTCACATGGTTAAGCACATGATCAAATGTCCAGATTGCCCGTTGCTCTTCAAAACAGAATCAGAACTGAAAGAGCATCAGTGGGAGCACATTCCAGTGCAGCACTCGTGCTCCGAGTGTGATCTCGTACTCGAAAACTCTGAGGAGCTGATCGTTCATATCAAGGAGATTCATAATCCTTCGAAACCTTTCCTTTGCACCAGGTGTTCGTTTGTCAGCAACGAAATTGAGGAGATGAGACAACACCTCAAAATCCACGAAGGACGGCCTGTTTTCACTTGCAACGTTTGTGGCAAAAAATACGTCAATCAAACACTTTTTAAGACTCATCAAGAGATTCATGAAGATGTCAAGAAATACTCTTGCGATATATGTGGCAGAAAGTTCGTGACCGATAAGTACTTGAAGATTCACAGATCTTTGAATCACCACAAGGAGTTGTATGGATATGAAGTTTCCTACTCCTGTCAGGAGTGCGGCAGAAAGTTCTCGTTTGAGAAGAGTTTGCGGAGGCATTTGACTCGTATTCACAAGATTGGTGTGGACACAACTGTTTCGTGCCCAGTTTGCTTGAAGAAGATTTGCAATAATTACAACTTGAAGGTCCATATGAGGATACACACGGGGGAGAAGACCAATATGTGCGATTTGTGCGGAAAATCCTACCATATATACAAGTCGTATAAGAAGCACGTTCTGGTGCATCATCCAGGGTATGAGCCTGTGCCCAAGACGGCACCAAAACAATTTTCCAAGGGACTTAAGAAAGATGTGGATTTGCTAAACATAAAGCAGGTCTATGCTTTACGAAACAGAACCCGAGGAAACTCTTCACGAACCAGAACTCGACAAAGCAAAATCAAAAAGAAGTGGGTTTGTAGAGACTGCAAAACAATTTGCACCACCAGAAGAGCCCTTACCAAACACAGAAGAACCCATAAACCCCCAGAAATCGAACGTTACAAATTCGACCAAAACCTAGGAGTCCACGTTTGCAACTCCTGTTCTGCTGAATTTCAAACAGAGACAGAAGTTGAGGAACATTACCAAAAAAAACATTTGGCAGTATTCTCCTGCGATAATTGCTCTCAGAAATTCGATAATCCCTACAGTTTCTCCTGTCACGTGCAACAACAGCATTCCGGGAATAATTTGTTCAGCTGCCCCTTGTGTCCCTACTCCACCCTCAGACGCTCTGCCATCCGCTCCCACATTAACCGCATACATCTTCACAAGTTCTCGCACTACTGCCAGACGTGCGGGAAAGGCTTCGACGATGCCCTTCGTTTCAGCGAGCACGAAAACGAACACAAGGGCACTCGACCCTTTCTTTGCGTAGTTTGTGGCAAATCTTTCGTCTATTCGAGAAACCTCTTCGTGCACCAGGTTCGCTACCACCCAGTTGGTATCAAAGGGCAATTGTCCAAAAACCAGTGTGACGTTTGCTTAAAAATGTTTGCTAAAGAATGCACTTTGGACAACCATATCGCCTTGGTGCACCCACAAAAGCCCTTTCCTAAAATTAAGAAGCATTTGTGTGATATTTGCGGCAAGGGATTCTCCGCGGCTGACAAGTACAACATACATTACCGGCTGCATACAGGAGATAAGCCTTACGTTTGCCAGTATTGCAGTAAGGGGTTCATAAAGAGGGACTATTTGACAATGCATGAGAGGGTGCATACTGGGGAGAAACCCTATTCTTGTCAATTCTGTGGAAAGTCTTTTAATCAAAGAGCTTCGCTTAGGGTGCATGTTAGGGGGCATACTGGAGAGAGGCCCTACATTTGCCTGTTTTGCAATGGCGGGTTTATATCCAACGGGGCTTTGAATCTGCACCGGAAGACCTGTGAAGGAGGAAATTAG
- Protein Sequence
- MDEVIYIDVIDEVPKKKRKTKPTKRQRTLCEHCGSMFLTQESYNNHVMSVHSMMKGFSPLDIKVLCPHCGLSCPNGRSFKRHMVKHMIKCPDCPLLFKTESELKEHQWEHIPVQHSCSECDLVLENSEELIVHIKEIHNPSKPFLCTRCSFVSNEIEEMRQHLKIHEGRPVFTCNVCGKKYVNQTLFKTHQEIHEDVKKYSCDICGRKFVTDKYLKIHRSLNHHKELYGYEVSYSCQECGRKFSFEKSLRRHLTRIHKIGVDTTVSCPVCLKKICNNYNLKVHMRIHTGEKTNMCDLCGKSYHIYKSYKKHVLVHHPGYEPVPKTAPKQFSKGLKKDVDLLNIKQVYALRNRTRGNSSRTRTRQSKIKKKWVCRDCKTICTTRRALTKHRRTHKPPEIERYKFDQNLGVHVCNSCSAEFQTETEVEEHYQKKHLAVFSCDNCSQKFDNPYSFSCHVQQQHSGNNLFSCPLCPYSTLRRSAIRSHINRIHLHKFSHYCQTCGKGFDDALRFSEHENEHKGTRPFLCVVCGKSFVYSRNLFVHQVRYHPVGIKGQLSKNQCDVCLKMFAKECTLDNHIALVHPQKPFPKIKKHLCDICGKGFSAADKYNIHYRLHTGDKPYVCQYCSKGFIKRDYLTMHERVHTGEKPYSCQFCGKSFNQRASLRVHVRGHTGERPYICLFCNGGFISNGALNLHRKTCEGGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -