Pful025448.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004623.1:17249838-17251805[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0017 0.1 14.0 1.5 1 23 11 34 11 34 0.96 2 20 5.4e-06 0.00031 21.9 2.0 1 23 43 65 43 65 0.99 3 20 0.00024 0.014 16.7 0.8 1 23 74 97 74 97 0.95 4 20 4.1e-05 0.0024 19.1 0.5 1 23 106 129 106 129 0.95 5 20 0.0097 0.57 11.6 1.9 1 23 138 161 138 161 0.96 6 20 0.00083 0.049 15.0 1.3 1 23 170 193 170 193 0.96 7 20 0.021 1.2 10.6 0.8 1 23 202 225 202 225 0.96 8 20 0.021 1.2 10.6 0.8 1 23 234 257 234 257 0.96 9 20 0.0019 0.11 13.9 0.5 1 23 266 289 266 289 0.95 10 20 0.00083 0.049 15.0 1.3 1 23 298 321 298 321 0.96 11 20 0.0054 0.31 12.4 1.3 1 23 330 353 330 353 0.95 12 20 0.0012 0.069 14.5 1.3 1 23 362 385 362 385 0.96 13 20 0.0012 0.069 14.5 1.3 1 23 394 417 394 417 0.96 14 20 0.0081 0.48 11.9 0.3 1 23 426 449 426 449 0.95 15 20 0.00083 0.049 15.0 1.3 1 23 458 481 458 481 0.96 16 20 0.011 0.64 11.5 0.4 1 23 490 513 490 513 0.95 17 20 0.0066 0.39 12.2 2.0 1 23 522 545 522 545 0.94 18 20 0.00055 0.032 15.6 1.1 1 23 554 577 554 577 0.96 19 20 0.00096 0.056 14.8 1.2 1 23 586 609 586 609 0.96 20 20 0.015 0.87 11.0 1.7 1 23 618 641 618 641 0.95
Sequence Information
- Coding Sequence
- ATGCATCGAAATAAGGATGAGATTGACTGGTTCCAGTGTGAGACATGCGGTTTCAAAACCAAATTTAAAGCTAACGTGAAACGGCACATTATTAATACACATCGAAATGAAGATGAGATTCAGTGGTTTCAATGCGAAGAATGCAACTACCAAACGAAAgaaaaaagtaacttgaaacGTCACATTAATACACATCGAAATGAAGATGAGATTCAATGGTTCGAGTGCGAAAAATGCGGctacaaaaccaaacaaaaagGTGTCCTGAAACGGCACATTATTAATACACATCGAAATGAAGATGAGATTCAATGCTTCGAGTGCGAAAAATGCGGctacaaaaccaaacaaaaagTTGCATTGAAACGGCACATTATTAATATACATCGAAATGAAGATGAGATTCAATGGTTCCAGTGCggaaaatgcgactacaaagccaAGGAAAAAGGTACCCTAAAACATCACATTAGTTACATACATCGAAGTAAAGATGAGATTCAGTGGTTCCAGTGCGCGAAATGCGAGTACAaaaccaaatttaaagttaactTGAAACGGCACATTATTAATATACATCGAAATGAAGATGAGATTCAATGGTTCCAATGTGGAAAATGCGACTTCAAAGCGAAAGAAAAGGGTGGCCTGAAACATCACATTATTAATATACATCGAAATGAAGATGAGATTCAATGGTTCCAATGTGGAAAATGCGACTTCAAAGCGAAAGAAAAGGGTGGCCTGAAACATCACATTATTAATATACATCGAAATGAAGATGAGATTCAATGGTtccagtgcgaaaaatgcgactacaaagcaaAAGAAAAGGGTAGCCTGAAACAGCACATTATTTACATACATGGAAATAAAGATGAGATTCAGTGGTTCCAGTGCGCAAAATGCGAGTACAAAACCAAATTCAAAGTTAACTTGAAACGGCACATTATTAATATACATCGAAATGAAGATGAGATTCAATGGTTCCAGTGCGAAAACTGCGACTACAAAGCAAAAGAAAAAGGTACCCTGAAACATCACATTATTTACGTACATGGAAATAAAGATGAGATTCAGTGGTtccagtgcgaaaaatgcgagtaCAAAACCAAATTCAATGTTAGCTTGAAACGGCACATTATTAATATACATCGAAATGAAGATGAGATTCAATGGTtccagtgcgaaaaatgcgagtaCAAAACCAAATTCAATGTTAGCTTGAAACGGCACATTATTAATATACATCGAAATGAAGATGAGATTCTGTGGTTCCAATGTggaaaatgcgactacaaagcaaAAGAAAAGGGTGGCCTGAAACAGCACATTATTTACATACATGGAAATAAAGATGAGATTCAGTGGTTCCAGTGCGCAAAATGCGAGTACAAAACCAAATTCAAAGTTAACTTGAAACGGCACATTATTAATATACATCGAAATGAAGATGAGATCCAATGGTtccagtgcgaaaaatgcgacttcAAAGCAAAAGAAAAGGGTGGCCTGAAACAGCACATTATTTACATACATGCAAATAAAGATGAGATTCAGTGGTTCCAGTGCGAAAACTGCGAGTACAAAAGCAAATTCAAAGTTAGCTTGAAACGGCACATATTTAATATACATCGAAATGAAGATGAAATTCAGTGGTTCCAATGTGGAAATtgcgactacaaaactaaaaaaaaatatgccTTGAAACAGCACATTATTAATATACATCGAAATTTAGATGAGATTCAGTGGTTCCAATGTGGAAATTGCGATTACAAAACTAAAGAAAAACGTACCTTGAAACGGCACATTATTAATATACATCGAAATGAAGATGAGATTCAGTGGTTCCAATGTGGAAATTGCCACTACAAAGCTAAAGAAAATGGTACGTTGAAACGGCACATTACTAATATACATCGAAATAAAAGAAAACGGGACTCAACGGTTGCACCAGTGTGCTAA
- Protein Sequence
- MHRNKDEIDWFQCETCGFKTKFKANVKRHIINTHRNEDEIQWFQCEECNYQTKEKSNLKRHINTHRNEDEIQWFECEKCGYKTKQKGVLKRHIINTHRNEDEIQCFECEKCGYKTKQKVALKRHIINIHRNEDEIQWFQCGKCDYKAKEKGTLKHHISYIHRSKDEIQWFQCAKCEYKTKFKVNLKRHIINIHRNEDEIQWFQCGKCDFKAKEKGGLKHHIINIHRNEDEIQWFQCGKCDFKAKEKGGLKHHIINIHRNEDEIQWFQCEKCDYKAKEKGSLKQHIIYIHGNKDEIQWFQCAKCEYKTKFKVNLKRHIINIHRNEDEIQWFQCENCDYKAKEKGTLKHHIIYVHGNKDEIQWFQCEKCEYKTKFNVSLKRHIINIHRNEDEIQWFQCEKCEYKTKFNVSLKRHIINIHRNEDEILWFQCGKCDYKAKEKGGLKQHIIYIHGNKDEIQWFQCAKCEYKTKFKVNLKRHIINIHRNEDEIQWFQCEKCDFKAKEKGGLKQHIIYIHANKDEIQWFQCENCEYKSKFKVSLKRHIFNIHRNEDEIQWFQCGNCDYKTKKKYALKQHIINIHRNLDEIQWFQCGNCDYKTKEKRTLKRHIINIHRNEDEIQWFQCGNCHYKAKENGTLKRHITNIHRNKRKRDSTVAPVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -