Pful013919.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_963924575.1
- Location
- OZ004619.1:28688591-28708816[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 9.5e-06 0.00056 21.1 0.7 2 23 164 185 163 185 0.97 2 16 0.0027 0.16 13.4 4.2 1 23 190 212 190 212 0.97 3 16 0.00059 0.035 15.5 5.2 1 23 218 240 218 240 0.97 4 16 0.016 0.91 11.0 0.8 1 20 246 265 246 267 0.93 5 16 8e-05 0.0047 18.2 0.2 1 23 274 296 274 296 0.98 6 16 0.0003 0.017 16.4 2.1 1 23 479 501 479 501 0.97 7 16 6e-05 0.0035 18.6 9.1 1 23 507 529 507 529 0.98 8 16 3.4e-06 0.0002 22.5 4.7 1 23 535 557 535 557 0.98 9 16 3e-05 0.0018 19.5 2.6 1 23 563 586 563 586 0.96 10 16 0.018 1 10.8 0.9 1 23 598 620 598 620 0.94 11 16 0.0027 0.16 13.4 8.5 1 23 626 648 626 648 0.98 12 16 3.7e-06 0.00022 22.4 0.5 1 23 655 677 655 677 0.96 13 16 2.3e-05 0.0014 19.9 1.3 1 23 683 705 683 705 0.98 14 16 7.1e-07 4.1e-05 24.7 0.9 3 23 713 733 711 733 0.96 15 16 3.5e-05 0.002 19.3 0.1 1 23 739 761 739 761 0.99 16 16 0.097 5.7 8.5 0.7 1 23 766 789 766 789 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTAATTCAGTACGATTTTACTCGTATCTGTCGCACCTGCAAGGGCGAAGCACTGGAGTTGAAATCCATTTTTGACGAATCCGGACCCATGGACGAAAGTCCCCGTATTGACGAGATGCTAATGGCTTGCACATCCCTAATGGTGAAAGAAGAGGACGATTTACCTAATTTGATATGTTTGAAATGCACCATAGAGTTAAAAAATTCTTTCGATTTCAAACGACAATGTGAAGAATCGGATGCAAGTTTAAGGGAATATGTAAAGACTGTGAATGGGGATAACAGTGCAGAAGACATAAAGCTCGAGGCAACTCAGCTTATTGATGGAGCTTCTGTTTTGTCTGCAGACAACTTCAACGACAGACAAAACTTCAAGGAGCTAGAAAACACCGAGGAAAACAATGTATCGAACAGAGACCCTAAAACCGGCGAACCGCCTAAAACTGATTTTATAGAATTTATGGACAACAATCAAATGCTACTGACTTGTCGCCAATGCGGAAAGGTCTTCACGACCCTCGACGGCCTAAGAAGTCACAAACGTATTCATCTGGGTACCCTATTCAAATGCCGCTTCTGCGGCAAAGGATATACGAGGCAAACGCACGTTTATCGCCATGAATTATCTCATGGAAAACACAAACTTCACGTGTGTCGGATATGTAACAAGACCTTAACCAGGATGGAACACTTAAAACGACATTTAACCACGCACCTAAAGGAGAAGCCATTCTCGTGTAAATCATGTAACAGGGGTTTCAACAGGACCGACCATTTAGATGTTCATGCTCTTAGATGTAAAGGGGAAAGAGTGTATATTTGTGATATTTGCAATAGGGGATTTACGAGGGGCGATAGCCTTGAGGTCCACAAGCGGCTGCACGAGAATCAGGCTCCAATACTACCAACTTTAGATAACATAGACAACATAGAGGAGCATTATTATGAAATCGATTACGATCCCAACGCAGTTTTAGCCTGCGGTTCGGACGTGGAGGATTGCTTCGAACCCCAAATAGAGGTTACAGAAAATTCGGATGAGGAAATGATGACTGATCTTCAGTCGCAGAATGATAATGATGCGTATCATCCTGATGAAGGTCGTGCTGATTCACCTGGCGCAAGGGTGGAAAATGACAATCGGCCTGTGGATGATACCGTTGAAGAGGAGGAGGAGGTGAAACTTCAGTTAATGAGCCAAGATGATGAAAACGAAGCGGCGTATGAACCTCCTAGTGATGACATAGCACATGACTCGGACAGCACCGATTCAGAATATCTACCCACAAAAATCGTCTCACCTAAAGTCAAACGTGGTCGGGGACGGCCCCGTCAAAACCAAACGACCCGTAAAGGTAGGGGCAGACCCAGGGGTCGTCCGCCTGGCCCGAAAAAGAACCGCAAGAATTCCGAAGAACAAGAAGGCGAGTTTCCGTGCTCCAGCTGTAACGAAGTGTTCAATAAAATGAGCCTCTTGGAGAAGCACATGAAGCATCACGACGACGTGAAGGATCACACGTGTAAAACGTGCAACAAGCGGTTTTCAAGATTCAACCACTTGAAGAGGCACATGATGTCACACGCAGTAGTTAAACCGTTCCAGTGCGAATTCTGCTCCAAGAGGTTTTCCCGAAGAGATCACTTGAACCAACATATTAGGTTGCACGACAAGAAGCCGGAATTCAACTGTGATGTTTGTTCGAAAAGCTTCAACCGGGCGGATCATTTGGCCAAACATAAAATGTCTAAACACAACATAGGGGAAAAGGTACCAGGGGAAAAGAAGTACGAATGCGGCACTTGTTCCAAAACGTTCACCACCGAGAAATACAGGGATGTGCACGTGAAAGGGCACATGGGCGAAAAACGCTTCAAATGTAAGACGTGCGAAAAGTGTTTCTTGTCAAAGTCCCACTTGACTGAACATATGAAGTTTCATAATGAACACTCGAAGAAGTTTTTGTGTTCAGAATGCGGTCAGAGGTTTATAAGAAATGACTATCTTGTGATCCACATGCGAAGACACAGAGGAGAGAAACCTTTCAAATGTAAATTCTGTGGTAAGGGCTTCCCTAGGACCACGGATTTGACCGTTCATGAACGGTATCACACTGGAGAGAAAACGCATTTGTGTACCATTTGTGGGAGAGGTTTTGGCAGGGCTTATAATTTAACTGTACACATGAGAACACACACCGGAGAGAAGCCTTACCAGTGTACATATTGTGATGCCGCCTTTGCTCAAGGAAACGATCTTAAAGCTCATGTGCGACGTCATACTGGCGAACGTTTCCAATGCGAACTTTGTACAGAGAGCTTCCTAATGGGGTACCTTCTCACACAGCACAAAAGAACAGTTCACGGGCTTAATGTGGTGAGTAACATAAGGCGACTGCAACCCGTCAATCAGATAAAACAAGATTCAGACGATCCGCCCCCCATTACCATACCGCTGCCCAAACCCGTCGTACCTGATAACATCCTCCTGAATGATATACAGGTTCATCTGGCTGCCCATATAACACATCATTTAGCGCCCGAATAA
- Protein Sequence
- MELIQYDFTRICRTCKGEALELKSIFDESGPMDESPRIDEMLMACTSLMVKEEDDLPNLICLKCTIELKNSFDFKRQCEESDASLREYVKTVNGDNSAEDIKLEATQLIDGASVLSADNFNDRQNFKELENTEENNVSNRDPKTGEPPKTDFIEFMDNNQMLLTCRQCGKVFTTLDGLRSHKRIHLGTLFKCRFCGKGYTRQTHVYRHELSHGKHKLHVCRICNKTLTRMEHLKRHLTTHLKEKPFSCKSCNRGFNRTDHLDVHALRCKGERVYICDICNRGFTRGDSLEVHKRLHENQAPILPTLDNIDNIEEHYYEIDYDPNAVLACGSDVEDCFEPQIEVTENSDEEMMTDLQSQNDNDAYHPDEGRADSPGARVENDNRPVDDTVEEEEEVKLQLMSQDDENEAAYEPPSDDIAHDSDSTDSEYLPTKIVSPKVKRGRGRPRQNQTTRKGRGRPRGRPPGPKKNRKNSEEQEGEFPCSSCNEVFNKMSLLEKHMKHHDDVKDHTCKTCNKRFSRFNHLKRHMMSHAVVKPFQCEFCSKRFSRRDHLNQHIRLHDKKPEFNCDVCSKSFNRADHLAKHKMSKHNIGEKVPGEKKYECGTCSKTFTTEKYRDVHVKGHMGEKRFKCKTCEKCFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVNQIKQDSDDPPPITIPLPKPVVPDNILLNDIQVHLAAHITHHLAPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -