Pful008697.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pycnomerus fuliginosus
Gene Symbol
-
Assembly
GCA_963924575.1
Location
OZ004618.1:15196639-15198904[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00066 0.038 15.3 2.5 2 23 47 68 46 68 0.96
2 19 1.4 82 4.8 2.3 1 23 87 109 87 109 0.96
3 19 0.0016 0.095 14.1 0.5 1 23 113 135 113 135 0.97
4 19 0.012 0.68 11.4 1.2 2 23 144 166 141 166 0.89
5 19 0.0021 0.12 13.7 0.1 1 23 172 194 172 194 0.95
6 19 0.00097 0.057 14.8 1.2 1 23 200 223 200 223 0.95
7 19 0.094 5.5 8.5 2.9 2 21 235 254 234 257 0.89
8 19 4.1e-05 0.0024 19.1 1.4 3 23 270 290 268 290 0.96
9 19 2.4e-05 0.0014 19.8 1.4 1 23 296 318 296 318 0.98
10 19 2.9e-06 0.00017 22.7 0.3 1 23 324 346 324 346 0.99
11 19 0.072 4.2 8.9 0.5 1 19 352 370 352 373 0.96
12 19 0.0013 0.078 14.4 1.4 2 21 445 464 444 467 0.88
13 19 1.5e-05 0.00089 20.5 0.4 1 23 475 497 475 497 0.98
14 19 0.00023 0.013 16.8 4.8 1 23 530 552 530 552 0.99
15 19 0.27 16 7.1 0.3 2 23 560 580 559 580 0.95
16 19 5.4e-06 0.00032 21.9 0.1 1 23 587 609 587 609 0.98
17 19 2e-05 0.0012 20.1 4.4 1 23 615 637 615 637 0.99
18 19 0.0003 0.018 16.4 1.1 1 23 643 665 643 665 0.99
19 19 0.13 7.9 8.0 3.2 1 21 671 691 671 692 0.93

Sequence Information

Coding Sequence
ATGGGTCGCTCTTGGAGTCTACAACTTCTATTTCCAGATAAAGCTTACTTGCTTCCATTGAACAGGAATATTAAACGAAGACTTAGAAAAATTAAACCTACGAAGAACAAACGAAAATATAACAAAAACAAGACGTGGCCGTGCCGGAAATGCAACCAGAGCTTTCGCACTCTACGGTTGTTGCGCACCCATAAAAAATCCCACGTTCCCGAAGATCCAGAAGAGCACACGTTCACGTTCGACCACCTGCAAGATCTGTTCATATGCAACACCTGCTGCGCAGAATACCAAAAAAAGGAGGAAATAGAGAAGCACATGAAAACGCACGAGGACATCTACGAATGCCGCGATTGCGgagaaaaattccagaaaatgtaTAGTTTTGCCACCCACATGGCCGGACATAGCCTCGACAAGGTGTTTCGATGCCCATGCCCCGAATGCTCTTACAAAACTGAAAAACGCACCAATCTGTTGATACATATAAATTACGTTCACTTGAAAAAGTTCTACTACGTTTGCGAGACTTGTGGCAAAGGGTTCAATGATGTAGTCCTGTTTAAAGAGCACGGAAACGAGCATTTAGGGATTCGTCCTTTCGTTTGCGTCGTCTGCAACAAGGACTTCACCTATTCCCGTTATCTACTAACTCATCAAGTTCGATACCATCGCGTATTGATAGAAGGAGAATTCCTTCCAAACCAATGTCAGCTCTGTAGCAAAATATTTAGTAAAATTGACACTTTGGAAAAGCATTGCCGGGATAGGCACGGCAAGAACAAATTGCCGCACGAGAAGAAGCACTTGTGTGATCTTTGTGGCAAAGGTTTTGCTCAGAAGAACAAACTTAGGATTCACTATCGAGTGCATACTGGGGTGAAGCCCTACACTTGTAGTTACTGCGCCAAGAGTTTCACCAAAAAGGATTATCTGGTGATGCATGAGCGAGTTCACAGTGGCGACAAGCCCTATTCGTGCGAGTATTGTGGCAAGAGCTTCAACCAGGGGGCGCCACTCAGGATACATCTGCGCACGCACACCGGGGAGAAGCCCTACGTTTGCGAGGCGTGCAAGACAGGATTTACCTCAAGGGGGGCACTTAATATCCATTGTAAAAACTGTACGGGCTTGGCAATTGGCCTTCGAAATCGATTTTTAATTAGCACCCAGCCGGTGCTATTATTATATAAGGTTCCCGGAAAAATAATGTTAACCAATCCAACTTTGAAAGCGAATCCACCTTTGATGGCCAATCTACCTTCGAAGGCTAATCCACCTTTGAGGGCCAATCCACCTTGGAGGCCCACTCCACTCCCAGTTCCGGCTGACATGAAATGCCAACCTTGCGGCAAAACCTTCAAAACCAGACGCACCTACCGACGCCACATAGGTTTCGTCCAcaaggcagaaaccttgccaaAATTTCCTTGCAATGTCTGCAATGTGCCTTTTACACTAAAGCAAAACCTGCAGAGGCACCTGTTGACCCACCAGCCAAAGCCCCCCCAACCCAAATGTGTAATTTGGCCAAAGGCTCGGACGGAGCCCAAAGCCACCAAAAAGATCGGTCCTGAAGACAGCATTCGGTACAAGTGCGAACATTGCAACAAATATTTCAAACAGTTGCCTTATTGGAAAAGTCACCTCAAAACACATGACCCCCTCTACGCGCTAGTTCCTTGCTCCGTCTGCGAGAAACCGATCAGCAAAGAGCGGATGAAGAGTCACATGAGGCGCCACGAAGAGGGCAAGCAGAAGTTTATGTGCGATGTCTGTGGAAAGGACTTTGCTGATCTCGGCTATTTCCGCGAACATATGAGGGTTCATACGGGAGAGATGCCTTATTCCTGCAAATTTTGCGCGAAGAGCTTCACTAGGAAAAAGTATTTGACAAATCACGAGCGAACCCACACTGGGGAAAAGCCCTATAAGTGTCAGCTTTGCGACAGCAGTTTCTCGCAGAGAGGGACGCTAGGGTTGCACTTGAAGAGACATGCCGGCAAAAAGGATTTCAAATGTGAAGTTTGCGAAAAGTCTTTCTTGTCTAGAACGGAGATGAAGAACCACAAATGCAAGGGTCCCAAGTGA
Protein Sequence
MGRSWSLQLLFPDKAYLLPLNRNIKRRLRKIKPTKNKRKYNKNKTWPCRKCNQSFRTLRLLRTHKKSHVPEDPEEHTFTFDHLQDLFICNTCCAEYQKKEEIEKHMKTHEDIYECRDCGEKFQKMYSFATHMAGHSLDKVFRCPCPECSYKTEKRTNLLIHINYVHLKKFYYVCETCGKGFNDVVLFKEHGNEHLGIRPFVCVVCNKDFTYSRYLLTHQVRYHRVLIEGEFLPNQCQLCSKIFSKIDTLEKHCRDRHGKNKLPHEKKHLCDLCGKGFAQKNKLRIHYRVHTGVKPYTCSYCAKSFTKKDYLVMHERVHSGDKPYSCEYCGKSFNQGAPLRIHLRTHTGEKPYVCEACKTGFTSRGALNIHCKNCTGLAIGLRNRFLISTQPVLLLYKVPGKIMLTNPTLKANPPLMANLPSKANPPLRANPPWRPTPLPVPADMKCQPCGKTFKTRRTYRRHIGFVHKAETLPKFPCNVCNVPFTLKQNLQRHLLTHQPKPPQPKCVIWPKARTEPKATKKIGPEDSIRYKCEHCNKYFKQLPYWKSHLKTHDPLYALVPCSVCEKPISKERMKSHMRRHEEGKQKFMCDVCGKDFADLGYFREHMRVHTGEMPYSCKFCAKSFTRKKYLTNHERTHTGEKPYKCQLCDSSFSQRGTLGLHLKRHAGKKDFKCEVCEKSFLSRTEMKNHKCKGPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-