Pful005886.1
Basic Information
- Insect
- Pycnomerus fuliginosus
- Gene Symbol
- clz9_35
- Assembly
- GCA_963924575.1
- Location
- OZ004617.1:44721295-44722833[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-06 0.0011 19.5 0.0 4 43 18 57 16 59 0.93 2 2 0.081 13 6.5 0.0 23 38 383 398 375 403 0.80
Sequence Information
- Coding Sequence
- ATGGTGAGAAAGTACCAGCGAAAAACTAACAAGGCCTCCTATTCGGCCCAAGACCTACAAACTGCTGTACAAAATGTATTAAATGGAACCTACGGGACATTACGGGCCAGCAGAGTCCTCAAAATACCTAGAAGCACAATTAAAGATCATGTCAGAGGTCGCAGAGGCACAAAAAGTTGTACAATGGGCAGGCCTACAGCCTTGCCAGCTGAAGATGAGGAAGTTCTCGCCCACGGACTTAAGTGCTTCGAAAAATGGGGTTTTGGACTTTGCCGAAAAGAAGTTTTGGAGCTTGTAGGCAAGTATGTGAaagaaaagaaaatcaaaacccCATTCAAGAACGGTGTACCCGGCGAAGACTGGTTTTTAAGATTTAAAAGGAAGCATAACTTGTCCATTCAAAAACCAGAAGCCCTAGAATATGCCAGAAAAAAAAACACCGACCCTTTCATTATATATCCCTATTTCGATTTGCTTAAAAATACCCTAGAAAAACTTGAACTGATGGACAAACCGTCAAATGTTTGGAACATGGATGAGACCAGCTTTTGTAGTGACCCTTTAAAAACGAAAGTTGTGGGCGAAAAAGGAAAGGCTTCTACAAGGATTGTTTCTAGCTCAGGGCGAACAAATACCAGTGTGCTCTTTGCTGCTGCCGCGGATGGACAAAAGGCTCCACCATTAATTATTTATAAGGGAAAGAATGTTTGGGATTCGTGGATTCCAAAAGAAAATACAGATTATCCAGGCACGACGTACGCTGCAACTGAAAACGGATGGATGGAGTCCAAAGTgttcaaaaactattttttaaaaacgttcatTCCGTACGTAAAAGAAACGGTTCCTGTTCTAGTCATATATGATGGTCATGCAACTCATGTGGATATAGATGTGATAGAAGCGGCTGCAGCAGCCAACATTACAATCTTAAAGCTACCGCCGCACAGCAGTCACCTATTACAACCGCTTGATTTGTCGGTCTTTCATTCGGTAAAAGTGGATTGGGATGCATCTCTCGTCAAGTGGCAACGTAATCATGTGGGACAAGTGCTACCTACGAGTAAGCTTGCTGAAATCGTTGGGAAAGTTTGGAAAGATGTAGATCCAAACATTATTTTTGCGGGTGCGTCCTTAACAAATTCTGCAAAAACGCACGATGTACCAAGGTCGATTTTACAAAGGcgttttaagagccaaaaagaGTTACCACATGCCGCCCAAAAGTCACTGGGTCGATTTAAATGCACATTTACCACGGCTCAAGAGAAAGAGTTGGAGAATTATATATTAGATAGGGAACGAAGACTATATGGCTTGACGCTTAAAGAATTCAGAGGTTTAGTTTTCCAGTTTGCGAACAAAAACAATGTACAAAATTACTTTAACAAAGAAGAAGAACTGGCTGGACGTGACTGGGTTTATAACTTTCTGAAAAGGCACCCAAACATTTCTCTTCGACGTCCTGAGAACACTTCTGCCGCCAGAGCTCAGGCCTTTAATCGATCAAATGTTTCAAAGCTCTTTGACTtgcattag
- Protein Sequence
- MVRKYQRKTNKASYSAQDLQTAVQNVLNGTYGTLRASRVLKIPRSTIKDHVRGRRGTKSCTMGRPTALPAEDEEVLAHGLKCFEKWGFGLCRKEVLELVGKYVKEKKIKTPFKNGVPGEDWFLRFKRKHNLSIQKPEALEYARKKNTDPFIIYPYFDLLKNTLEKLELMDKPSNVWNMDETSFCSDPLKTKVVGEKGKASTRIVSSSGRTNTSVLFAAAADGQKAPPLIIYKGKNVWDSWIPKENTDYPGTTYAATENGWMESKVFKNYFLKTFIPYVKETVPVLVIYDGHATHVDIDVIEAAAAANITILKLPPHSSHLLQPLDLSVFHSVKVDWDASLVKWQRNHVGQVLPTSKLAEIVGKVWKDVDPNIIFAGASLTNSAKTHDVPRSILQRRFKSQKELPHAAQKSLGRFKCTFTTAQEKELENYILDRERRLYGLTLKEFRGLVFQFANKNNVQNYFNKEEELAGRDWVYNFLKRHPNISLRRPENTSAARAQAFNRSNVSKLFDLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -