Pcon003177.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- -
- Assembly
- GCA_963942525.1
- Location
- OZ012636.1:25064939-25080365[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.11 7 7.2 0.5 3 23 369 391 367 391 0.92 2 14 8.9 5.9e+02 1.2 1.9 1 22 536 557 536 560 0.89 3 14 0.0015 0.1 13.1 0.8 3 19 618 634 617 637 0.94 4 14 5.8 3.8e+02 1.8 0.5 1 23 652 676 652 676 0.91 5 14 2 1.3e+02 3.3 0.5 1 22 681 702 681 705 0.85 6 14 0.23 15 6.2 0.0 2 23 724 746 723 746 0.95 7 14 0.016 1.1 9.8 0.2 1 21 751 771 751 772 0.93 8 14 0.0025 0.16 12.4 1.7 2 23 1000 1020 999 1020 0.92 9 14 5.2e-05 0.0034 17.7 1.8 1 23 1026 1049 1026 1049 0.97 10 14 0.0037 0.25 11.8 3.2 1 23 1089 1111 1089 1111 0.96 11 14 0.061 4 8.0 2.1 1 23 1174 1198 1174 1198 0.97 12 14 0.6 39 4.9 8.2 1 23 1204 1228 1204 1228 0.96 13 14 0.093 6.1 7.4 6.1 1 23 1241 1263 1241 1263 0.97 14 14 0.00057 0.038 14.4 3.3 1 21 1269 1289 1269 1290 0.95
Sequence Information
- Coding Sequence
- ATGATAGACGAAGATGATGATTTAGATGATAcacatttatgtataaaatgcAGTGCAACGATACACGGTCTAGCAAACTATGTACAACATCGTAAAGCATCTTGTTCAGAGAAACACATACCGCATCCAATAGAGGAAATCCAACAAGTTCAACATTCGTACACGTCATATGATTTTCCTAGTACCAATGTTAATGTTGTCGTATCAAAAAgtcaattagaaaattttccatttagCTATGACCTAgatcatcatcaccatcacCACCATGATCATGATGGACAAGTGGAGCATGATGACGGTAGTGGAGACGctgaaaatgaaaatggtaACGATGGTGCGAGTAGAAATGCAGATGCAGACTtagaaaatgttaataaaaaaagtgtgTCCAGCGTAACAAAAGATATAACAGCAGAAagctataattttaattatggaTTAGGCGCAGATGTGTTCTTTTCCTCGCTGGAATTGCAAAGTAGTACTAGAAAAGGGAGTACTGATGGCCCTAATGTAACTACTGGTGGAAAAGTAGGCCCACATAATCGAATATTGACGAGAAAGGCTACAGCGGCAATATTAGCACATCATGGTGATACTGATCCGCATGTCGATGATTGGATTGGTAGTAACACACAAAGTGAATCAGAGGATAAACTTATGAAAGCGGTAAATGATATCAGTGGTGCGGCAAGTGGAACTACTAACAGCAAAAAAGTTGAAACTATGTTtggattaattgaatttcacCCAGATTCTCCAATTTCCAGTTCAGATGATGCTGATGACGAAGAAGAAGATTTCGACGCACCACCAAGAGGTCACACTGGTGGTAAGTGGAAACCAGAACATCGTCCAATTGATAATTATCCAGCTTGGGATGTGCGACATCATCACTGGGATATAACTGATGATACGGCAATAGTTAATAATAGttccaaattatttaaacctaACAGTAATAATACTGATGAATTAGATGATGAATTTTCACCTCCACCAGATTATACTAAAGGTAAATGGGTTCCTGGTTCTAAAATAACTAAACTTGAATATAAAAGTGATTTCGAAGtgaaaaaaacttataacGATCAATATTGGTGTTCAATATGTAATCGAAAATTGTCTTCTCGTATTGTTTACGAGAGACATTTGCGATCTAATTTACACTTAAAAAGGGCACAACCGGAAAATGAACTAGAAGAAGCATCAAGATCATTTATTGATGCTTCCTTATTATCACGGCGCATCACAAAACCATCGATCTACCTAAATCAGGATATTTATGCTACAAGTTTGCAATTAAAACGAACTAAACATTCGTCTGCAGCAATAAGTGCAGAATTTGAAAAGGATTTTAAAGAGTTAAGTGAGATTAcagataatcaattaaatacagAAGGGTTGGATGTTGCATCGAAGCAGATAAGAAAACGAAATCGATTTTATATTCGTTGCGATTCATGCCGTACTCGTCTTCCAATTCATCTATTTGGAAAACATTTGATATCACATTACCATTATCGTCGAATGATAAATACGCCTGAAAAATCTTATACTGTAATTCTTGAAAATATGCATCGTATTGTTCGAGAATCTCCGTTCCAATGCCAACCGTGTCATTTTTATGCAaacaatgaagaaaattttaatcgcCATTGGAATTCTAAGGAACATTTAAAAGTTGTCACTCCATTATCTGGTAAATATTGGTGTATTCTCTGTCAATTTGAATGCAAAGAGAACAATGAAATGTTTGAACATATCACAGGCGAAGAACATTTAGAAGTAATATGTGTCATTAATCGGTCAGTACCAATTATTATTCGAAaacgtataattttattatgtaaagatTGCAATAAGGAGTTTCGCTATAATATAGAACTCAGAAAGCATTCTTCAAAATGTCGACCATCAGGCACCGGCACAAATCAATATCAATCAAGATTTATGTGCACATTATGTCCTTCAATTGTTTTTCACTCACGTATTGCTGTGCAAAAACATCAAGGTAAAATTCAtcagcaaaaaatttatttttgtcgcccgtgtgatttaaaatttaaatcacctAATGAAGCACGATATCATCGTAATTCCGCTGTGCATAAAATAGCAGTTTTCAAACTGCGAAACGCCAGTGATAGTtttaaattagcaaaaaagTGTACCATTTGCGCTGAAACACTGCCTGATATAATTCAATTGAAAAGCCACATTGCAATAGCGCATCCCGAATCGAAGCATAGTTGCTCGTTGTGTggcaaaaaattcattttggcACAGGAAGTTAGCCGTCACGTTAGAGATAAGGCATGTAAATTTGATGACGCTGAGAACCTCGTTAATATTCATGTAGATGGTAATATTTTACGAAATAAACCGTATGAATGTGATCTACCAGTTGCACCATTTACATCTGCTGTTGCCATTAATACGCCTGATGAAATTGCGACTACTATTTCAACCGACACCACAACCATCGTCGCTACCACCAGTAAAAACACCACATTTACATTACCCGTAAATAATTTCATCGACACCAGGACAATCACCACAAAGTGCACTAACTCTTccgaaatgtttttttcaatTGCTCCAGTTGTAACGCAATCATGTTACACACCCAAAACCGTTACATCACTAATAAAAACCGATGgtgtaaatatagaaaattgtaaaatcaCAGCAGGAAcagtaacaacaaataaactaaatagcaTTAAATCAGTGATAGGTGTTGATGATGGTCAAACAGAAGTTGAGGTGCTTATCGCAGGGGTTGATAATGTTAATACCACAAATCAAGATGCGACAACAgtgacaaacaataataataatagtaataataaaaaaaattcagcaTGGAAATGTAAATTTTGTCCATTTAAAACATCATCACAGGCGGAATGTATTTTTCATGAGATTCTTCATAATATACgagaaacaaacattttggATACGACTGCAATATCACCAGCAAAATTACTCGAATGTTCAATTTGTGGTAAAAAATTTCGCAAATCATCATTACGCTTTCACCTGCAACAACATACAAATGAGCGGATTTTCAAATGTCGCGAATGCCTAATGACATTTACACGACGACAAAATCTTAAAAACCATATAGCACGTTTGCATAGAATTGTTGAAGCATCGTCTaacataacaaatataaatggtGATACAGGTGCAAACCCGACgaacataaagaaaagaaaaaaacaatcgcGTGATTTTGAAAATCACTCCTGTAATTACATATGCCAAATTTGTGATAAAAGCTTTAGGAAAAGGTGCATTTTAAAGCAGCATTTGTATGTACAtcgtaatgaaattaaaaatcatgaaAGAACACCAATACCTGTGTTATCAACAGACGATGTAACAGAAACAGCAATTATTGTTGATACGATAACACCATTAACAACTGTagaaacaacaacagtaacagcagcagcagaagtatcaccaacaataataaaaaaattaccaatcataaaaatcaaagaataTAAATGTGATCATgataattgtatattttcatGTCGAAGTCCTAGTGAACTTAAAGCACACCTGTTGATAcattcaacaataaaaaattacgaaTGTGATCATCATAgttgtaattataaaacaaaaacgttaAAGCAACTTAaaaggcataagaaaaaacatacaGAAACGTTGAATAAGGGCATCAGTAGTTTTAAGCATGAGTGTATGCACTGTAATTACAAGACACAACTGGTCGCTCATTTGAAACGTCATATGAGGGTACATACAGGTGAAAAACCATACAAATGTCCACACTGTGATTATGCAAGTAATAATTGTGAAAATCTCCGAAAGCATttACATGTAACGTCACCTATATGCAAACATTTGTTTTTACAGACATCTATCGAAAATTATAACATTGAATAA
- Protein Sequence
- MIDEDDDLDDTHLCIKCSATIHGLANYVQHRKASCSEKHIPHPIEEIQQVQHSYTSYDFPSTNVNVVVSKSQLENFPFSYDLDHHHHHHHDHDGQVEHDDGSGDAENENGNDGASRNADADLENVNKKSVSSVTKDITAESYNFNYGLGADVFFSSLELQSSTRKGSTDGPNVTTGGKVGPHNRILTRKATAAILAHHGDTDPHVDDWIGSNTQSESEDKLMKAVNDISGAASGTTNSKKVETMFGLIEFHPDSPISSSDDADDEEEDFDAPPRGHTGGKWKPEHRPIDNYPAWDVRHHHWDITDDTAIVNNSSKLFKPNSNNTDELDDEFSPPPDYTKGKWVPGSKITKLEYKSDFEVKKTYNDQYWCSICNRKLSSRIVYERHLRSNLHLKRAQPENELEEASRSFIDASLLSRRITKPSIYLNQDIYATSLQLKRTKHSSAAISAEFEKDFKELSEITDNQLNTEGLDVASKQIRKRNRFYIRCDSCRTRLPIHLFGKHLISHYHYRRMINTPEKSYTVILENMHRIVRESPFQCQPCHFYANNEENFNRHWNSKEHLKVVTPLSGKYWCILCQFECKENNEMFEHITGEEHLEVICVINRSVPIIIRKRIILLCKDCNKEFRYNIELRKHSSKCRPSGTGTNQYQSRFMCTLCPSIVFHSRIAVQKHQGKIHQQKIYFCRPCDLKFKSPNEARYHRNSAVHKIAVFKLRNASDSFKLAKKCTICAETLPDIIQLKSHIAIAHPESKHSCSLCGKKFILAQEVSRHVRDKACKFDDAENLVNIHVDGNILRNKPYECDLPVAPFTSAVAINTPDEIATTISTDTTTIVATTSKNTTFTLPVNNFIDTRTITTKCTNSSEMFFSIAPVVTQSCYTPKTVTSLIKTDGVNIENCKITAGTVTTNKLNSIKSVIGVDDGQTEVEVLIAGVDNVNTTNQDATTVTNNNNNSNNKKNSAWKCKFCPFKTSSQAECIFHEILHNIRETNILDTTAISPAKLLECSICGKKFRKSSLRFHLQQHTNERIFKCRECLMTFTRRQNLKNHIARLHRIVEASSNITNINGDTGANPTNIKKRKKQSRDFENHSCNYICQICDKSFRKRCILKQHLYVHRNEIKNHERTPIPVLSTDDVTETAIIVDTITPLTTVETTTVTAAAEVSPTIIKKLPIIKIKEYKCDHDNCIFSCRSPSELKAHLLIHSTIKNYECDHHSCNYKTKTLKQLKRHKKKHTETLNKGISSFKHECMHCNYKTQLVAHLKRHMRVHTGEKPYKCPHCDYASNNCENLRKHLHVTSPICKHLFLQTSIENYNIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -