Pcon010924.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- -
- Assembly
- GCA_963942525.1
- Location
- OZ012638.1:27366001-27370295[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8 5.3e+02 1.3 0.2 1 8 108 115 108 117 0.92 2 12 0.01 0.66 10.5 2.9 1 19 280 298 280 299 0.96 3 12 0.17 11 6.6 0.3 2 19 317 334 316 337 0.87 4 12 0.00023 0.015 15.7 0.4 2 23 340 361 339 361 0.97 5 12 0.00079 0.052 14.0 0.7 1 23 368 391 368 391 0.93 6 12 5.8 3.8e+02 1.8 0.4 1 9 496 504 496 505 0.93 7 12 0.11 7.2 7.2 4.5 1 21 680 700 680 701 0.93 8 12 0.84 55 4.4 0.9 3 20 718 732 717 735 0.76 9 12 6.7e-06 0.00044 20.5 0.4 1 23 741 763 741 763 0.97 10 12 4.5e-05 0.003 17.9 0.9 2 23 769 790 768 790 0.97 11 12 0.0026 0.17 12.3 0.7 1 23 797 820 797 820 0.93 12 12 1.3 85 3.8 1.4 1 11 826 836 826 836 0.93
Sequence Information
- Coding Sequence
- atgttttgttcTGTAATTGGGTGTTTACAATCAGATACGGACAATGGTTCGAAATTATTACCAAAAGATCAATTAGAAATGAATGTTTGGTCAAAATTTGTGAAGTTTAGAAGTCTCGCAATatgtaaagataataaaatttgtgagTCTCATTACAATCAATACATTGTACAGGTACAAAAAGTATTAATGGATACATTAAAAAACGCATCTGTCGAATCCGAAAAGAAACGAATTAGTGACGATGATTACAATAGTGATGCATCGGTTAAACaggtagaaaagaaaaactgcgATGATGGCAGTAACGAGGATACTGAATATGTATGTCGATTATGTGGCAAAGCACAGAGTCATTTTATGAAAAGTCTTTTTACACCGGAAATTGCATCAACGCCAGGATTTCACGATTTAATAATATGCTATTTTGAAATTCGAATATTAAAGACAGATAATGTGAAAACCATTTGCTCAAATTGTATAAGAAGAATACGAAGTATTATTGCTTATAGGACAAAATGTCAGGAAGTTAACAAAGTCGACGCAATAAAAATTGACCTAGactcaaatgaaaataatgaagaagATAATAAACCTGAATTTGAATTTGTAGCcagtaattcatttaattcgtACGATCAAGCTGCGACTGATTCAAAATTGGtaattaaaagtgaaattataaaagaaacggAACCAAATGAATcggaaaaattaattgaagagAATGGTTTTGATGAAAACAATGAAACTGAAGATGAAACCGACGAAGATCAATTTTATGAAGcagaacataataaaaaaatagaaattgaaGATGATAATactaattttaaacataaatgtaaTCACTGTCAAAaaTTTTTGCGCACAAGAACGGCATTGCGTAGTCATGCACCAGTTTGTCGGCTTGGCGGTATATGGAAGGGCAATGTAAAGTTCCGTCAAACATGTccaatatgtaataaaaaaGCAAGTTTAAATGAGCACATGGAGAGTcacaatgaaaagaaaataaaatgcccGGATTGTGATGAACTCTTTAATGGACCAATACATTTACGAAGACACAAAATACGTCATAATGAATCTGCAatGAGGCACATGTGTGAATTTTGttcaagaaaatttataagacCTGTTGAATTGCGTATGCATATCGGTGTCTTTCATAATGGGGAAAAGGCATTTAAATGTGATGAATGCActaCCGTAACATGTTGCATCGTCATGTGGAAAAAGTTCACAATACAAATATCAATATTGGACGAACAAATAgaattatCTCATTACAATCAATACTATTTGCATGTACAAAACATATTAAGGGATAAACGTAGAGATACATTTATTaaggaaaaacaagtaaaagatGCACCTATAAAATCCAAGAAGAAACGAATAAGTGATGATGATTGCAATAGTAAAGGGTCCAAACAGGCAAAGAAGATAAAATACGATGATGCTATTAACGATGATACTGAATATGTATGTCGATTATGTGGCAAAACACAGAGGtattttatgaaaagtttttttacaCCGGAAATTGCATCAACGCCAGGATTTCACGATTTAATAATATGCTATTTTGAAATTCGAATATTAGAGACAGATACTTTGAAAACCATTTGCTCGTATTGTATAGGAAAAATACGAGGTATTATTGCTTATAAGATAAAATGTCAGGAAGTTAACAAAGtggacataataaaaattgaactagacacaaatgaaaataatgaggAAGTTATTGCAGATGTTAAGGATATCGATAACAAACCTGAATTTGAATTTGTAGCCAGTAATTCTTTTGATTTGTACGATCAGGCTGTAATTGattcaaaattattgattaaaagtgaaattaaagaagaaacggAACCAAAAGAAtctgaaaaattaattgaagagAATGGTTATGATGAAAACAATGAAACTGAAGATGTCGATGAGCATGAAACCGACGAAGATCAATTTTATGAAGCagaatatgataaaaaattagaaattgaAGATGATAATactaattttaaacataaatgttGTCACTGTCAAAAATTTTTGCGTACAAGAAGGGCACTTCGTATGCATGCACAAGTTTGTCGGCTTGGCGATGAATGGAAGGGCGATGAAAAGTTCCGTGAAGCATGTccaatatgtaataaaaaagtgtCGTCACTAAAACACcatattgtttttcattcaaaaaagaaaaaattcatttgtaaattatgcgataaaaaattttatgttgcgTCAAGTTTAAGGGAACACATGGAGATTcacaatgaaaagaaaataaaatgtccgGATTGTGATGAACTCTTTAATGGACCAATACATTTACGAAGACACAAAAGACGTCACAATGATTCTGCAatGAGACACATGTGTGAATTTTGTTCAAGAAGATTTATAAAACCTGTTGAATTGCGTATGCATATCGGTGTCTTTCATAATGGAGAAAAGGCATTTAAATGTGATGAATGCGATGAaggatttaagtaa
- Protein Sequence
- MFCSVIGCLQSDTDNGSKLLPKDQLEMNVWSKFVKFRSLAICKDNKICESHYNQYIVQVQKVLMDTLKNASVESEKKRISDDDYNSDASVKQVEKKNCDDGSNEDTEYVCRLCGKAQSHFMKSLFTPEIASTPGFHDLIICYFEIRILKTDNVKTICSNCIRRIRSIIAYRTKCQEVNKVDAIKIDLDSNENNEEDNKPEFEFVASNSFNSYDQAATDSKLVIKSEIIKETEPNESEKLIEENGFDENNETEDETDEDQFYEAEHNKKIEIEDDNTNFKHKCNHCQKFLRTRTALRSHAPVCRLGGIWKGNVKFRQTCPICNKKASLNEHMESHNEKKIKCPDCDELFNGPIHLRRHKIRHNESAMRHMCEFCSRKFIRPVELRMHIGVFHNGEKAFKCDECTTVTCCIVMWKKFTIQISILDEQIELSHYNQYYLHVQNILRDKRRDTFIKEKQVKDAPIKSKKKRISDDDCNSKGSKQAKKIKYDDAINDDTEYVCRLCGKTQRYFMKSFFTPEIASTPGFHDLIICYFEIRILETDTLKTICSYCIGKIRGIIAYKIKCQEVNKVDIIKIELDTNENNEEVIADVKDIDNKPEFEFVASNSFDLYDQAVIDSKLLIKSEIKEETEPKESEKLIEENGYDENNETEDVDEHETDEDQFYEAEYDKKLEIEDDNTNFKHKCCHCQKFLRTRRALRMHAQVCRLGDEWKGDEKFREACPICNKKVSSLKHHIVFHSKKKKFICKLCDKKFYVASSLREHMEIHNEKKIKCPDCDELFNGPIHLRRHKRRHNDSAMRHMCEFCSRRFIKPVELRMHIGVFHNGEKAFKCDECDEGFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -