Basic Information

Insect: Ptychoptera contaminata
Gene Symbol: -
Assembly: GCA_963942525.1
Location: OZ012638.1:25947624-25950102[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00025 0.017 15.5 0.7 1 23 103 125 103 125 0.99

2 10 0.93 62 4.3 0.5 1 11 148 158 148 171 0.77

3 10 0.23 15 6.2 2.7 1 20 273 292 273 296 0.92

4 10 2.8 1.9e+02 2.8 0.1 2 23 304 325 303 325 0.80

5 10 1.3e-05 0.00086 19.6 0.2 1 23 331 353 331 353 0.97

6 10 4.6e-05 0.0031 17.8 2.8 2 23 371 393 370 393 0.97

7 10 0.0013 0.089 13.2 0.6 1 23 399 421 399 421 0.97

8 10 0.0063 0.41 11.1 0.3 2 23 428 449 427 449 0.97

9 10 8.6e-05 0.0056 17.0 1.5 1 23 455 478 455 478 0.98

10 10 0.00063 0.041 14.3 0.4 2 23 486 507 485 507 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00025	0.017	15.5	0.7	1	23	103	125	103	125	0.99
2	10	0.93	62	4.3	0.5	1	11	148	158	148	171	0.77
3	10	0.23	15	6.2	2.7	1	20	273	292	273	296	0.92
4	10	2.8	1.9e+02	2.8	0.1	2	23	304	325	303	325	0.80
5	10	1.3e-05	0.00086	19.6	0.2	1	23	331	353	331	353	0.97
6	10	4.6e-05	0.0031	17.8	2.8	2	23	371	393	370	393	0.97
7	10	0.0013	0.089	13.2	0.6	1	23	399	421	399	421	0.97
8	10	0.0063	0.41	11.1	0.3	2	23	428	449	427	449	0.97
9	10	8.6e-05	0.0056	17.0	1.5	1	23	455	478	455	478	0.98
10	10	0.00063	0.041	14.3	0.4	2	23	486	507	485	507	0.96

Sequence Information

Coding Sequence: atggaCTATAATAAGacTTACGATGTCGATTTAAATGAGCTAATGgcatatgaaaataaagaattttgtaCTGATGATTATATTACCTTTAATGATACAGACTCATCTGATCAACAATTAAACGATAATgGTATTCAAGATCAGTGTATTGAAAATGATgtgtattatgaaataatatgtAAAGAAGATGAAACCTATGATGATATAAAGCAGGATAATCAATTAaaaTTGTACGCATCAATCGTGTCAAAAATGGgcaaaaataccaaaataaaaGATTGTGTAATTGGAAATTTGAAAGCCAGATATCAATGTAAAAAATGTGATTATATATCAAATAAGCCAGATAAATTAGTTGAACATTACCGAATTCATACTGAACAGCCGCATGTCTGTGATGAGATTAGTGAAAATGACCTGAGGCAAAATACTAAAGAAATGTTTCAATGCAGCGAATGTCCAGCAGTTTTTGATTGGATTGAATCGTGTAACAAACACATACAAGAGgaacaTAATCCAAGTAATGACACTGAAGAATTGGAgccaaatgttaataattttataaatactatTGTTTGTAAACCTAAGAAAACTAGTGAAGAAATTGTGGCggtagaaaataaaaccaaaaaagatGAGATATTACATGATAATTGGTTAAAGCCAATGCCTTTAAAGGaattaaaatctaaattaaaacgaaaatttatttataaATGTTCGTTTAAAGGATGTCTATATGCGTTTGAATTTCCTGAAAAACGCGAGTTACACATTAAATGCCATACTTCTACAGAAGCCGGTAAAGTACGCGATTTCAAATGTTCTGAATGTTCAATGGAATACAAATCGTGGAGAAATTGTACATCGCATTTATGGAAGGAACACAAAATTGATATTGATTTACTGAAGTGTCCATTATGTGATTATAAAGCAGGAATAGCAGtaaaaatttttcaacatATTCAAATTCATGGTACCACTAAAGGATTTGCATGCGGCATATGTCCAAAAAATTTTACACAACTAGCACAATTACGGCAACATTCTTTAACACATTTAAGTACAgctaaatataacaataatccGATGCGATGGTACACCCAGAAAACATGTGATATATGCCAGCATGTGTTTTCTACATCGAAAACATTATCAAAGCATGTAAAAACCgtgcataataaaataaaaccatttataTGCAATGTTTGTGGATAcaaatcagcaaaaaaaagtACATGGATGattCACACGAGACAACATACGGGTGAAAAACCATTGCAATGTAAAACATGCCCATTTAAAGCATCCGATCCAAGTGTTTTAACTAAGCACGAAATGCGTCATACAAAaGAACATCCATATAAATGTCAGTATTGTACTTATAGTGCTGTGCAAACTAGTACACTTAAAAATCACATTCGTATAAAACatccaaatgataataaatctattaaatGCAATCTATGTGATTTCGAGTCTATAAATAAAGATACATTACAAAAGCATATAATGGATCATAATTCAGGGTTAATAAAGCCGAATGAAGATTCATGCGAAACACAAGACTCATCaccaaaaagtttattaaaaaatcagcGTCACATAACTGATGGTTCAATGAATAATGTTgagatATCATCAGATTGCTTTTTAACAGTAGAAAGTACAGATTCATTGGCACATGATTTACCACTAGATACAGGTGGTGTAACAATACCAGCACATTCAGAAGATACTCAGTTTcccattatattataa
Protein Sequence: MDYNKTYDVDLNELMAYENKEFCTDDYITFNDTDSSDQQLNDNGIQDQCIENDVYYEIICKEDETYDDIKQDNQLKLYASIVSKMGKNTKIKDCVIGNLKARYQCKKCDYISNKPDKLVEHYRIHTEQPHVCDEISENDLRQNTKEMFQCSECPAVFDWIESCNKHIQEEHNPSNDTEELEPNVNNFINTIVCKPKKTSEEIVAVENKTKKDEILHDNWLKPMPLKELKSKLKRKFIYKCSFKGCLYAFEFPEKRELHIKCHTSTEAGKVRDFKCSECSMEYKSWRNCTSHLWKEHKIDIDLLKCPLCDYKAGIAVKIFQHIQIHGTTKGFACGICPKNFTQLAQLRQHSLTHLSTAKYNNNPMRWYTQKTCDICQHVFSTSKTLSKHVKTVHNKIKPFICNVCGYKSAKKSTWMIHTRQHTGEKPLQCKTCPFKASDPSVLTKHEMRHTKEHPYKCQYCTYSAVQTSTLKNHIRIKHPNDNKSIKCNLCDFESINKDTLQKHIMDHNSGLIKPNEDSCETQDSSPKSLLKNQRHITDGSMNNVEISSDCFLTVESTDSLAHDLPLDTGGVTIPAHSEDTQFPIIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -