Basic Information

Insect: Ptychoptera contaminata
Gene Symbol: -
Assembly: GCA_963942525.1
Location: OZ012639.1:23982978-23990626[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.1e-05 0.0007 19.8 1.1 2 23 124 145 124 145 0.97

2 10 2.8e-07 1.8e-05 24.8 0.5 1 23 151 173 151 173 0.98

3 10 2.2e-05 0.0015 18.8 0.4 1 23 179 201 179 201 0.94

4 10 3.3e-06 0.00022 21.4 0.3 1 23 207 231 207 232 0.94

5 10 2.3e-05 0.0015 18.8 1.2 1 23 237 259 237 259 0.98

6 10 4.8e-05 0.0031 17.8 2.1 1 23 266 290 266 290 0.97

7 10 0.0011 0.075 13.5 1.1 1 23 306 328 306 328 0.99

8 10 0.0041 0.27 11.7 4.9 1 23 334 359 334 359 0.94

9 10 0.0052 0.35 11.4 0.9 3 23 382 405 380 405 0.85

10 10 0.0052 0.34 11.4 0.5 2 23 696 718 695 718 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.1e-05	0.0007	19.8	1.1	2	23	124	145	124	145	0.97
2	10	2.8e-07	1.8e-05	24.8	0.5	1	23	151	173	151	173	0.98
3	10	2.2e-05	0.0015	18.8	0.4	1	23	179	201	179	201	0.94
4	10	3.3e-06	0.00022	21.4	0.3	1	23	207	231	207	232	0.94
5	10	2.3e-05	0.0015	18.8	1.2	1	23	237	259	237	259	0.98
6	10	4.8e-05	0.0031	17.8	2.1	1	23	266	290	266	290	0.97
7	10	0.0011	0.075	13.5	1.1	1	23	306	328	306	328	0.99
8	10	0.0041	0.27	11.7	4.9	1	23	334	359	334	359	0.94
9	10	0.0052	0.35	11.4	0.9	3	23	382	405	380	405	0.85
10	10	0.0052	0.34	11.4	0.5	2	23	696	718	695	718	0.95

Sequence Information

Coding Sequence: ATGGATAATGTTTGTGGCATTTGTTTTCAAACCGGGGAGttATTTCAAGTGCCAGGCTATGGTCAACCCACATGTAATAAATGTACAGGACaattagcaacaaaaacaTTAGTGTCAAGTTTTTATcgtaatcatcatcatcatcaccataATCATCatcgcaataataataataataatagtagtagtagtaataTAACAGGAtctggtggtggtggtggcggCGGTAGTGGTGGTGTTAGTAGTGGAGGTGTTATTGGTTTAGTCGGAGTTGGAAGTAGTAGTGGACTTGGCTTAATTGAACAAATGCAACAAACTGAAAATCAAGCAAATATAAcaaacaatGAACAACTGGTCGGTGAAGAAGGTAGTTGTCCTGTGTGTTCAAAATACTTTTCGCGTAGAACGTCTCTTTTAAATCACATAAGAAATCATTCAGCtgagaaaaaatatgtttgcaCATATTGTCAAaaggGGTTTACACAAGCAGCCAATTTACGCAATCATGAAAGAATTCATACAAATGAACGTCCTTATATATGCATTGATTGTGGAAAGGCGTTTACAcagATAACAAATTTGAACAATCATCGTAGGCTGCATACTGGAGAAAGACCATTTGTTTGTGTTGAAGCAGACTGTGGTCGCGCTTTTGCACAGgtaactaatttaaataatcatatgAAAACTCATCATAAAGTGCAAACATATCCATGCACTCAATGTTCGCGAAAATTTGTACAGCTCACACAATTGAACAATCATCTCAACTCACATAACTCGGGGGTGCGATCGTTTTTTTGTCCACAATGTCCGAACAAAGCATATAAACAACAGGCCCACCTCCAACAACATATGAGGACCCAACATCAGATAGGATTAAATGGTGAGAAGCTACCAATATTAGaggcaaaatataaatgtacgATGTGTTCCAGTGCTTTTACGGAGGAACTTATGCTAAAAAAACACATACAACGCCATATCGATGGAAGatATTATACATGCTCAATACCAGGTTGTAATCAaggttttacaattaaaagtcATCTACAAAAACATCTACATCAATGTCATTCTATTGAATTTCCAAAACGTATGGCAGTAAATAAACAACGTACAAATCAACTTGGTAAACATAATTGTTATTTCGAGTCGTGCGATGAATCTTTTGACGATGCAGATCAATTAAACAATCACATACATGGTGTCCATGGTCTATCAATTGTTAAAAATGCcggtaaaaaaacaaaaatggatTATATGCTAACAGAACagttaaacaaaatgaaagaaaataatttattatcatcacaTATTAACGCTGCTAATGCTGCTGGtatacatcatcatcatcacttAAATCCACATCATCCACCAACATTATTACCACCATCGACATTCTCTTCATCTTTATTGACATCACAACAACACCAACAACAActccaacaacaacaacaacacaacCAACATCATCACCAACAACAACATTTACAATCTACATTGTCACCAACAACAACCTCACAAATTGCAGCAGCGGCGGCAGCGGCCGCGGCAGCAGCTGTTGCAGCAGCTACATCATCATCTTCGGCAGCTTCCTCCTCTGTTATGACACCAACAACGACTACAACGAATGGCGGGTCAAATAGTGAAACAACAATGATACAAGACTATGCAGAACGTTTCAATGTGTACAGATACTTAACGACACCATTTGTTGCACCTGGAATACAGCAAAACATACCTATGCAAAATCCAATGTTTCCATCAACAAAGCGTGTCCTATCGgtatctgaattattaaatcaagCAAAGGATGAAAATGGTTTACGGAAAGATGGCACAAATGGTTTAAGTGATTTAGAACCGAAATTAATTGGAATTGTTCcgGAAACTCAAGCACATTTTCAATTAGATAAGAAATCAGTTGATTATCATCATCGTTTAAATAATGGCAGTGGTATTAgtagtggtggtggtggtggtgttaTCGGTGTcggtagtagtagtagtagtggtATAATTGGTAATATAATGCAAACTACAAATAATCAGGAACAAATAAATCCAGCACAAATGAAATTAGTGTGTAACTTTTgttataatgtatttaaaacacCACAAACATTGGGTAGACATATTGACAGATTCCatagtcaaaattaa
Protein Sequence: MDNVCGICFQTGELFQVPGYGQPTCNKCTGQLATKTLVSSFYRNHHHHHHNHHRNNNNNNSSSSNITGSGGGGGGGSGGVSSGGVIGLVGVGSSSGLGLIEQMQQTENQANITNNEQLVGEEGSCPVCSKYFSRRTSLLNHIRNHSAEKKYVCTYCQKGFTQAANLRNHERIHTNERPYICIDCGKAFTQITNLNNHRRLHTGERPFVCVEADCGRAFAQVTNLNNHMKTHHKVQTYPCTQCSRKFVQLTQLNNHLNSHNSGVRSFFCPQCPNKAYKQQAHLQQHMRTQHQIGLNGEKLPILEAKYKCTMCSSAFTEELMLKKHIQRHIDGRYYTCSIPGCNQGFTIKSHLQKHLHQCHSIEFPKRMAVNKQRTNQLGKHNCYFESCDESFDDADQLNNHIHGVHGLSIVKNAGKKTKMDYMLTEQLNKMKENNLLSSHINAANAAGIHHHHHLNPHHPPTLLPPSTFSSSLLTSQQHQQQLQQQQQHNQHHHQQQHLQSTLSPTTTSQIAAAAAAAAAAAVAAATSSSSAASSSVMTPTTTTTNGGSNSETTMIQDYAERFNVYRYLTTPFVAPGIQQNIPMQNPMFPSTKRVLSVSELLNQAKDENGLRKDGTNGLSDLEPKLIGIVPETQAHFQLDKKSVDYHHRLNNGSGISSGGGGGVIGVGSSSSSGIIGNIMQTTNNQEQINPAQMKLVCNFCYNVFKTPQTLGRHIDRFHSQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01276484;
90% Identity: iTF_01276484;
80% Identity: -