Pcon006098.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- -
- Assembly
- GCA_963942525.1
- Location
- OZ012637.1:11346950-11352748[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.17 11 6.6 2.4 1 23 976 999 976 999 0.97 2 12 0.059 3.9 8.1 0.4 1 23 1089 1111 1089 1111 0.97 3 12 1.9e-05 0.0012 19.1 2.3 2 23 1114 1135 1113 1135 0.97 4 12 8.9e-05 0.0058 16.9 1.4 1 23 1141 1163 1141 1163 0.98 5 12 1.8e-05 0.0012 19.1 1.4 2 23 1170 1192 1169 1192 0.96 6 12 0.0014 0.094 13.1 2.6 2 23 1229 1251 1228 1251 0.95 7 12 0.3 20 5.9 3.2 2 23 1264 1284 1263 1284 0.97 8 12 1.9e-06 0.00013 22.2 1.6 1 20 1290 1309 1290 1312 0.95 9 12 7e-05 0.0046 17.3 0.4 1 23 1320 1342 1320 1342 0.98 10 12 0.0003 0.02 15.3 5.8 1 23 1348 1370 1348 1370 0.98 11 12 1.8e-05 0.0012 19.1 2.9 1 23 1376 1398 1376 1398 0.99 12 12 0.0044 0.29 11.6 4.5 1 23 1404 1426 1404 1427 0.96
Sequence Information
- Coding Sequence
- ATGCACTCTCAAGTAAGATGTCCAGTATGTACACTTTACCTGCACGAAGGCATGGCGTTGGAGGAGCACTTAGAAACTCATCCAAAAGATCAAGTGATTAAAGCATTGGTTTCAATGACTGTACAACAATTGTCATCTAGCCATGGGCATACTgatgcaaataatattaataattcttctaTAATACCCTTTAAGTCATTTAAACGCATAACTGAAACAAATCAAACACCGTCATATCAAATCCCACCATCTATAAACTATGATaatgcaattaattatttaacagatGCAACAACACAACGTAATGTAATGATTGTAAACCGTTGTAGTACTCAATATATACATACGAGTCCACTAACATcaacaattaaagaaaatcgtGCAATAGAACGCAATAGtggttataataatgaattgcaAACATTAACTcgtgtaaataacaattgtaTTATGTCTCCGATGACAAATTCGACAATTAAtgatattgataatattacACTAAATGAGCATGATGGattcaataattttgaaaCTTTTAAGTATCCAAACCCAGCAAATGATGATATTTCACAATTTCAAAGGTATGAATTGCCACCTCCACCGGCCTATAGTGTAGCCATCTCTGagggtaaaaataataattcatcatCTATAGTCAAATCACAACTTCCGCAAGCATATGATACTATTGTAAAACTGAGTTCATCTCCTTcaaatgatattttaaataataaaacgaataataaaaataatagtataaacgttaataatgataatattaataacataattgttattaatgataataaaaattctattatgcCAAATTCATTAAATGATATACCACCACTGACCAATTCAACAACTAATTATaacgatattttattaacgtccagaactaaaaaatattgtaatgaaGGATTTATTAACACAGGTAAAAATATCCATGGAAATGATAATGATTCTATAAACGTGAATGctaacattataaatttagaaGATACTGATGATTTGAATAAAGGAAGCATAGATATtttaaaaacgattaaaacgGATCTTCAAGAACAACCGGAatcatttaaaacaaagaacaAGAAagcattttcaattatttcaaaaaatattacaaatattgatgatcgacaaaataaaaaatcaactcCAATAAACATATTAAGTAATGTAAAATTACCACCAGAACTATCATTAGGTATCGaagatattatatttaatagaaaaataaatatagataataattGTACATATACGATAAATGAAgtgaatgaaaatgaaattattaaacctGGAACATCTAaaactattataattaaaaatgaaaacgttAACAATGAAGATAACAAAAATagtgattatttaaatttaaatgataataattatggcAATATTGGTAATGAGGATACCAATTCGGTATATTCCATTATATCACTAGATGaagttaaattagaaaatgatgacaaaataagtaaacaatCATGTACTACaagtgttataaaaattaaccatAACCTTGCTAATCTTAATATTGATAGAAatgatgtaaataaaaaatcaacaacttcctgtaatatgaataaaagtaATCAATTACCTCATTGTTCAAAACTATTAACTTCAGCGTCTACAAGTGCAAAGACATCAATAGCATCATCATTTAAGAGTAAATCAAAGCAAACGGCAAATTATAATAGAGCTCCTAAAAAATtagttgttaaatttataaaaccatTCTTACctgaaacaaataatttcgAAGATAAAATAACTGGTGGAATTTTAAATGAAGataacaaatcaaataattttaatagtattataaatttagatgataattttaataatattaaaaaaaatgcaaatgatATGAATCCTGTAACAACACCAGTAATAACAAGTGTGTTTTCTTTAGcaaataatgcaaataaatcattatttaattttgataataataaaactaatgcaCCTAAAGACATagctaataatgataatgattgtcaaataattaatgatgattgtgaaatagttaataattttaataagattgaTGGTAATGAAGcagaattaaaaacatttacaaataatgatgtaataaaggaaaataaagatTTAGATATTagtcaaaaatataataaagatattgatgataaaaaaaacgttattgCTGATCAAAAAGAAGATGTCATAACAGCTGGACCTAGTAATTTAAACGATAATTATGTAGTACGtgataatcaaattaaagaattaagtGCAAAGAATAATTTGGAAACTACAAATACTGCTATAGATGATAAtgataacatatttttaaattcatcaaATCTTACTTATCGTTTACGATGTTTTTCACCAATTGGATTTATATCAGACGATATTCCATTGACATGGAATCAACACTTCAGTCCTCAGTATGTACCATTTGACAATCATAATAATCTTGAACGAAACACACCATCTTACATGGATTTAGATACAATatgtaaaacaacaaattcagCAATGAGTGACCGTGCTCCATCTATAGATAGTTTAAATATACGTACAGATGAAAAGATGCCAGCAAAAGGTGAAATATCAGAGCAAGAAAGCAATGGTGAAATGGAACATGGATCCTGGAATAATCCGTTATATGCAAATGAAACAATACCACAATATCCGAGCTCTTATGATATGTCTGTAGCAAGGGAAAGCTGGAGTTTAAGTAGTTGTAATAATGATAGAGAGAAGGAttcaaatgttttaataactaaatttACACCCTTGTCAACAGAGAAAGATCTCAAATTAGAATTAAAACCACCAATAGTAAATGCGGTCAATAATAATGTCAAagacgaaataaaaattgaaactaTACAAACAACTGCAAACCCTGTGTATAATCCATTTATAAAAACTCAACGAAAATATCGGTGTACATTATGCACAAGCATTTTTCCttcattaaaacataaacGAACACATATATCAATGGAGCATTCTGATAATTCAACGTTGGGAATGACAACTCTACTGAGTCATaacagtaaaattaaaactaattcaaAGACTACTACTTCAACCTCTACATCAtcatctttaaaaattaaaacagaaagtGAAAAATTGACACCTTCTATTACTGCAAATGCACCAACACCTAGAAAAACGCAATGCGTTCTGATggactttaataaattaaaaaatgatttaatgagTGATATACACTCGCCGattgttaatttaacttttaaaaagaaaaaaatttatgtatgtgccacttgtaatttaaaattcataagTGTCAAATCATTTGATAATCATTTAACAATACATCCAGTTGAATGCAACACATGTGGACGTCATTTTAAACAGTGGTACAGTTTGTCTTTGCATTTAAAACGTCATCttggaattaaaaattattcttgttattaCTGCAATAAACGCTTTGTAATACGTCAAAAACTAATAGAACATATGAGAATTCATACTGGGGTAACACCAATAAAATGTCGAGAATGCCCGGAATCATTTCGCCGTTATTCAAATTTGGTACAACATCGCAAACGTTATCATTTGAAATGCAGACCTAAACAAAAAGACTATGTTTGCCATTGTGGCGAAGTTGTTCATTCCTTTGCTAAGTTTTTATGGCATAAAGAAATACATGACAAAAAACCTAAAGTATGTGCATTTTGTCGGGAACgttttatacacaaaaatagTTTAACACGTCATATTCGATTATCTCATCCCGAGaagtatttaaatatgaaaaaacaaacaatagaaTGTCATATATGTAATCAACATTATTTGAAATCAAGTATTAAAACGCATATATTAACACATAGTAAAAAAAGTGAATATAAATGTTCTATATGCAATAAGACATTTACAACAAAATGGAATTTGAAACAGCATCGTTGGATTCATGCAAGCCGTTCAACAAAAccatataaatgtaatttatgtaGTAAAGCATTTATCCGTGAGGCTGAATATACAACACAtgttaatattcataaatcagTTAAACCATATACTTGTGATCATTGTGGGTGCAAATTTGGGCGTAAATATAATTGGTTACGTCATACAAGAGAGCATGAATTACCTAAACGTTATCAATGTAATATATGTAACAAGTTATTTCATCGAGCTTATTATTTAACAGCTCATCGAAGAGTTCATACAGGAGAAAGACCATTTACATGTAATATTTGTGGCAAAACTTCAGCCTCTAaaacaaatcataataaacatGTTAAAATACATCATGCACGAGATCCATTAACTGCAGaaggataa
- Protein Sequence
- MHSQVRCPVCTLYLHEGMALEEHLETHPKDQVIKALVSMTVQQLSSSHGHTDANNINNSSIIPFKSFKRITETNQTPSYQIPPSINYDNAINYLTDATTQRNVMIVNRCSTQYIHTSPLTSTIKENRAIERNSGYNNELQTLTRVNNNCIMSPMTNSTINDIDNITLNEHDGFNNFETFKYPNPANDDISQFQRYELPPPPAYSVAISEGKNNNSSSIVKSQLPQAYDTIVKLSSSPSNDILNNKTNNKNNSINVNNDNINNIIVINDNKNSIMPNSLNDIPPLTNSTTNYNDILLTSRTKKYCNEGFINTGKNIHGNDNDSINVNANIINLEDTDDLNKGSIDILKTIKTDLQEQPESFKTKNKKAFSIISKNITNIDDRQNKKSTPINILSNVKLPPELSLGIEDIIFNRKINIDNNCTYTINEVNENEIIKPGTSKTIIIKNENVNNEDNKNSDYLNLNDNNYGNIGNEDTNSVYSIISLDEVKLENDDKISKQSCTTSVIKINHNLANLNIDRNDVNKKSTTSCNMNKSNQLPHCSKLLTSASTSAKTSIASSFKSKSKQTANYNRAPKKLVVKFIKPFLPETNNFEDKITGGILNEDNKSNNFNSIINLDDNFNNIKKNANDMNPVTTPVITSVFSLANNANKSLFNFDNNKTNAPKDIANNDNDCQIINDDCEIVNNFNKIDGNEAELKTFTNNDVIKENKDLDISQKYNKDIDDKKNVIADQKEDVITAGPSNLNDNYVVRDNQIKELSAKNNLETTNTAIDDNDNIFLNSSNLTYRLRCFSPIGFISDDIPLTWNQHFSPQYVPFDNHNNLERNTPSYMDLDTICKTTNSAMSDRAPSIDSLNIRTDEKMPAKGEISEQESNGEMEHGSWNNPLYANETIPQYPSSYDMSVARESWSLSSCNNDREKDSNVLITKFTPLSTEKDLKLELKPPIVNAVNNNVKDEIKIETIQTTANPVYNPFIKTQRKYRCTLCTSIFPSLKHKRTHISMEHSDNSTLGMTTLLSHNSKIKTNSKTTTSTSTSSSLKIKTESEKLTPSITANAPTPRKTQCVLMDFNKLKNDLMSDIHSPIVNLTFKKKKIYVCATCNLKFISVKSFDNHLTIHPVECNTCGRHFKQWYSLSLHLKRHLGIKNYSCYYCNKRFVIRQKLIEHMRIHTGVTPIKCRECPESFRRYSNLVQHRKRYHLKCRPKQKDYVCHCGEVVHSFAKFLWHKEIHDKKPKVCAFCRERFIHKNSLTRHIRLSHPEKYLNMKKQTIECHICNQHYLKSSIKTHILTHSKKSEYKCSICNKTFTTKWNLKQHRWIHASRSTKPYKCNLCSKAFIREAEYTTHVNIHKSVKPYTCDHCGCKFGRKYNWLRHTREHELPKRYQCNICNKLFHRAYYLTAHRRVHTGERPFTCNICGKTSASKTNHNKHVKIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -