Pcon014421.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- -
- Assembly
- GCA_963942525.1
- Location
- OZ012639.1:28382954-28385139[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0076 0.5 10.9 0.5 1 23 157 179 157 179 0.98 2 13 0.025 1.7 9.2 3.0 1 23 182 205 182 205 0.92 3 13 0.00013 0.0085 16.4 0.9 1 23 265 287 265 287 0.98 4 13 0.00092 0.06 13.7 0.6 1 23 308 330 308 330 0.98 5 13 0.027 1.8 9.1 0.8 1 19 344 362 344 365 0.94 6 13 0.74 49 4.6 0.2 1 19 461 479 461 481 0.85 7 13 0.21 14 6.3 0.3 1 23 487 512 487 512 0.95 8 13 0.00032 0.021 15.2 1.9 1 21 518 538 518 539 0.94 9 13 8.5e-05 0.0056 17.0 1.4 2 23 547 568 546 568 0.96 10 13 9e-06 0.00059 20.1 1.4 1 23 574 596 574 596 0.97 11 13 8.2e-06 0.00054 20.2 3.8 1 23 602 624 602 624 0.97 12 13 9.9e-05 0.0065 16.8 1.6 1 23 630 652 630 652 0.97 13 13 2.5e-05 0.0017 18.6 5.6 2 23 659 680 658 680 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTTCTAGAAGATCAAGAATatgaattacaaataaattcaaatgaaaTATGTCGTGCATGTTTGACGCaagagaataatttaaaaaatattttttgtaatgataTTGTCGATggaacaattataaattttccaaatatttatgaattagTAACTGgattaaaaGTTAAAAAGAATGATGGATTTCCCGAAAATATTTGCATGTTGTGTAAAGGAAAGATTAacgaattatatattttcaaagaGAAATGTAAACGTTCATTTGAATTACTACAAAAGTTATTCAAaacaaatgatttatcaacGGATAATGTGgtgatagtaaaaaataaggaaTTTCAGAACCAAGAATGTACAGAATCGGACATTAATACATCAAAACCGGATTCAGCAAATAAATCGTTATTGGAATTAGTGGatgaaaatattgaatttgaCGTTATAGAAAAAACTTTACCGAATAACTATAAATGtgatatatgtattttatcgTATGATTCATTGGATAAATATCAAAATCATATGGAGAGTCATGAGGAGTTTAAATGTTGTTACTGCTCGAAAACCTTTGAAAATAACTTGCTACGAGAGGAACACATATCAAACGAACATAATCAAGATGATAACGACAATACAAGTAAAGTATTAAAtccaacaataattaaatctttttctgAGGAAGGTTCCTATTATGAAATTGAGACGATAAGAACAATGTCCGAGAGTAGTTCAATTGTAGACGATTGTGATGAATACATTGAAGGTCTCGTTGATGATGAGCAAACTACTTACGAATGTTTAATTTGTAATGAAGAATTCTCGAAGCAATCTTTATATTTTGAGCATTTGAAAAATCACGATATTTATGCAAATCAGGAGCGTCcagtaaaaactaaaaaacgaGAACGTTCAAAGTCATATAAATGTCCACTTTGCAAAATTACTGTCAAGCATCAGGATCAAATCGATAAACACATTGAAATTCATaggaaaacaataaatttattactggATGCTGTTTACTTCTTTAAATGCTCAAATTGTCGTAGTGTCTTCTTTAATGCGGAACAACTAGAGAGCCATTTTACTAGTACTGAAAAAAGAGTATGCGCTCCATGTCCGCTAGACAAATCCTGTACAGACTATCAATTTATTGAATATGGAATAACGCCGAATGCAACAAGTAATTCATCAGCGAAAGTTATATCATGTTTCAAATCGAAAACGAAAGAATTGCAGTGCGAGCAATGTTTTGAGTATTCAGCGAATACTGTTGATGAACTCCTGAAGCATACAATTGAGAATCATTCTACATCAACAGAAGAGCAACCTACCAATGATTCTCCATCTTCCGCTAAGCCCTTAGACGATGAAGCGCATATGTGTGGTTTctgtaatttagttttttcaaatataaactCGGCCCGGTTgcacgtttatttttatatgaaattctTTTCCTGTCCATTTCCAAATTGCGGCAGTGAATATGATAGTTTTGTCCGGTTAAACACTCACATGTACAAGGCACATGCAATcgaaaatgaatacatttgCTATTATTGCAATGAGAAGTTTAAGCAGTACGAGGAACTGAAGAAACACTTCAAAATGGAGTGCAACAAGCGAACGTTAAGCTGTACATTCTGCGATAAGAAATATATCACACAGCTCAGTTTGAACAATCACATGAAACTACATACACGcgagaaaaaatttttttgccaTTATTGTGGCAAAGGATATATCCAAAGTGGTGATCTGGCGACACATCGTCGCCTCCACACCGgcgaaaaaccatttaaatgcacaatatgtaataaaacatttcgCACCGCCAGCCACCGTAAAGATCATATGACGGCGCATAATAATGAGCGTCCGTTTGAGtgcaatttatgtaaaaaaaagttcaaatCCGAGCGAGTACTGAGGAGCCACATGGAACTACATACTGGCACAAAGAAATGTGAATGCACAATATGTGGCCGACGTTTTGCACGCAAACAACACGTAACGACACACATGAAACGGCATCTTCGTGATTACTCTGCGGTGCAACAAGCCAAAGAGGAGGAAGAATAcgaaaatgatgatgatgatgaatcacaataa
- Protein Sequence
- MEVLEDQEYELQINSNEICRACLTQENNLKNIFCNDIVDGTIINFPNIYELVTGLKVKKNDGFPENICMLCKGKINELYIFKEKCKRSFELLQKLFKTNDLSTDNVVIVKNKEFQNQECTESDINTSKPDSANKSLLELVDENIEFDVIEKTLPNNYKCDICILSYDSLDKYQNHMESHEEFKCCYCSKTFENNLLREEHISNEHNQDDNDNTSKVLNPTIIKSFSEEGSYYEIETIRTMSESSSIVDDCDEYIEGLVDDEQTTYECLICNEEFSKQSLYFEHLKNHDIYANQERPVKTKKRERSKSYKCPLCKITVKHQDQIDKHIEIHRKTINLLLDAVYFFKCSNCRSVFFNAEQLESHFTSTEKRVCAPCPLDKSCTDYQFIEYGITPNATSNSSAKVISCFKSKTKELQCEQCFEYSANTVDELLKHTIENHSTSTEEQPTNDSPSSAKPLDDEAHMCGFCNLVFSNINSARLHVYFYMKFFSCPFPNCGSEYDSFVRLNTHMYKAHAIENEYICYYCNEKFKQYEELKKHFKMECNKRTLSCTFCDKKYITQLSLNNHMKLHTREKKFFCHYCGKGYIQSGDLATHRRLHTGEKPFKCTICNKTFRTASHRKDHMTAHNNERPFECNLCKKKFKSERVLRSHMELHTGTKKCECTICGRRFARKQHVTTHMKRHLRDYSAVQQAKEEEEYENDDDDESQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -