Pcon004743.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- -
- Assembly
- GCA_963942525.1
- Location
- OZ012636.1:44996641-44999487[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.79 52 4.5 0.4 1 12 90 101 90 110 0.81 2 12 2.3 1.5e+02 3.1 3.5 1 20 198 217 198 219 0.93 3 12 0.0013 0.085 13.3 3.4 2 23 231 252 230 252 0.97 4 12 0.011 0.7 10.4 5.7 1 23 280 302 280 302 0.97 5 12 0.25 16 6.1 1.3 1 22 336 356 336 357 0.72 6 12 4.7e-06 0.00031 20.9 0.7 1 23 363 385 363 385 0.98 7 12 2e-05 0.0013 19.0 1.5 1 23 402 424 402 424 0.98 8 12 4.6e-07 3e-05 24.1 3.8 1 23 430 452 430 452 0.98 9 12 0.00066 0.044 14.2 6.6 1 23 458 480 458 480 0.98 10 12 1.1e-05 0.00075 19.7 0.7 1 23 486 508 486 508 0.98 11 12 4.2e-05 0.0028 18.0 0.1 1 23 512 534 512 534 0.98 12 12 1.5e-05 0.00098 19.4 0.5 1 23 543 565 543 566 0.96
Sequence Information
- Coding Sequence
- ATGTCAGgtAAACGAAGAACTGTAAATAATGACATTGAAAATGATATACCCGTCAATGAAATATTGATCAATcgtgataataataagaatattaaaaatgaaattgaagaCATTAATGAGGATGAGGAAGAAAGTTATTTAGAAGCAGAGTATATAGTTGATGATATTATAGTAAATGAAGAGTCGCCGGAATATGTGTTAGAAGGTCAAGATAATGATTTGATAGAAATAACTGATTATGAAGAAATTGAAGAAGAAGTTGGTGAATATAATTGTAATAGATGTAACATAACCTTTAATTCCATTGAGGATCATATTCGTAATTATCATGTAGATCAGGAAGTTTTAATTGAAactcAGGAAGATATTGAAGATGATCAACAATTAAGTATCGTAAAACAAGAACCAAATAgtgatttatattatataagtgataatgaacaaaattatattgaagAAAGTGTGGAGGAGCCTAAGAAGACGTTTAAGACAATCAAACAGGAAAATTGTTTAGATAAAGATGGTAGAGTTTACACAAGAAAGGAAGTGAAAATAGACAAATTTTGGAATAAATCTCAAGACGAGAAAACACATACATGTGCatcatgtaataataaatttcgtaCATTGAAACAAATGGTACAGCATAAATGTGATCaggaaataaaagttaaacaaattgAAATGATTGAATGTTCATTATGCGATCATAAATGTACAACAACTAAATTATTAGCATCACATATGCGTGTGCATAAAGAACAGACTGTTACAAAGCGTAATATAGCTAAAGTGACACAACCAAATGCTACtgaaaaaccaattaaaaacGATAAGCACGAATGTTTAGAATGTCATACTATATTTGCTTCGCATAAAAGTCTACGATTACATTCTCGTATGCATGAtccaatcaaacaaaaaacattagaTGAAACATTAGATTTTGAATTACGGTCATCAGGTgctaaaaatgatataaattcaaataaaatacgtgaaatgttttattgtaatttttgcgATAAAAGTTATGATACAATATTTAAGGAAATACATATGAGCATCCATACAGATGAACCCAATTTTAATTGTtcaatttgcaataaaaagtttgcaaatcaattaaatttaacaatgcATGCTAGAGTACATCAAGAATATAAAGTAACAGAAAACAAAGGGTTGATGGCTGATTTGCGTTATGAATGTGCGTATTGCGGAAGACGATTTTCACGACCTcatgaaaaagtaaaacatgAAAGAATACATActgGTGAAAAACCACACGTTTGTGAAATTTGTGGAAAAAGTTTTCGTGTTTCTTATTGCCTAACATTGCATATGAGGACACATACTGGTGCTCGTCCCTACGTTTGTCCACATTGTAACAAGAGATTTAAAGCTCATTCAGTTTATAATCACCATTTGATGACTCATTCCGAAGTGCGAAATTATCAATGCACATTTTGTCCAAAGACATTCAAGACAGCTGTTCAATTGGCTGGCCATAAAAATAGCCATACGAAACCATTTAGCTGTACAGAATGTAATCGTCCATTTGCCACATTATATGCTGTTCGTGTCCACATAGAAACACACAAGAAACTAGTACACAATCTAAGGTTTAAATGTACAATATGTGGGGCAGCATATGCCAGAAATTTTGCATTACGTGATCACATAAAGGAGCACCATGGAACTGTTAAATACGAAAATGTTGagaTAATGGATACTGATGGTATTGCAATGGAGTTACAATTAAATGAGAATGATGAGGTTGATGCTGATGATGAGGCGCACACATCATCCCAATCAATTTTACTTGAAAATGAAGGTGATATTGATGAACAACAgTTAACTGGAATTGATGAAGAAGTTGTTACTGATTGGCTTCatcctaaaaaataa
- Protein Sequence
- MSGKRRTVNNDIENDIPVNEILINRDNNKNIKNEIEDINEDEEESYLEAEYIVDDIIVNEESPEYVLEGQDNDLIEITDYEEIEEEVGEYNCNRCNITFNSIEDHIRNYHVDQEVLIETQEDIEDDQQLSIVKQEPNSDLYYISDNEQNYIEESVEEPKKTFKTIKQENCLDKDGRVYTRKEVKIDKFWNKSQDEKTHTCASCNNKFRTLKQMVQHKCDQEIKVKQIEMIECSLCDHKCTTTKLLASHMRVHKEQTVTKRNIAKVTQPNATEKPIKNDKHECLECHTIFASHKSLRLHSRMHDPIKQKTLDETLDFELRSSGAKNDINSNKIREMFYCNFCDKSYDTIFKEIHMSIHTDEPNFNCSICNKKFANQLNLTMHARVHQEYKVTENKGLMADLRYECAYCGRRFSRPHEKVKHERIHTGEKPHVCEICGKSFRVSYCLTLHMRTHTGARPYVCPHCNKRFKAHSVYNHHLMTHSEVRNYQCTFCPKTFKTAVQLAGHKNSHTKPFSCTECNRPFATLYAVRVHIETHKKLVHNLRFKCTICGAAYARNFALRDHIKEHHGTVKYENVEIMDTDGIAMELQLNENDEVDADDEAHTSSQSILLENEGDIDEQQLTGIDEEVVTDWLHPKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01276428;
- 90% Identity
- -
- 80% Identity
- -