Pcon001580.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- -
- Assembly
- GCA_963942525.1
- Location
- OZ012636.1:1046371-1049912[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2 78 4.0 3.0 1 20 44 63 44 68 0.87 2 17 0.00018 0.012 16.0 2.1 1 23 83 105 83 105 0.95 3 17 0.21 14 6.3 0.4 1 12 111 122 111 134 0.79 4 17 0.016 1.1 9.8 2.5 1 23 137 160 137 160 0.94 5 17 0.00032 0.021 15.2 0.4 2 20 169 187 168 189 0.93 6 17 0.00034 0.022 15.1 0.7 1 23 197 219 197 219 0.98 7 17 0.012 0.78 10.3 4.0 3 23 227 247 225 247 0.96 8 17 0.00031 0.02 15.2 1.1 1 23 253 275 253 275 0.94 9 17 0.86 56 4.4 0.4 1 21 281 301 281 302 0.94 10 17 1.3e-06 8.4e-05 22.7 2.0 1 23 642 665 642 665 0.98 11 17 0.00091 0.06 13.8 0.2 1 23 703 725 703 725 0.95 12 17 1.2e-05 0.00081 19.6 0.3 2 23 761 783 760 783 0.94 13 17 7.6e-06 0.0005 20.3 0.4 1 21 800 820 800 821 0.94 14 17 0.00068 0.045 14.1 2.0 1 23 829 851 829 851 0.98 15 17 5.4e-05 0.0036 17.6 2.4 3 23 859 879 857 879 0.96 16 17 0.00019 0.013 15.9 3.6 1 23 885 907 885 907 0.97 17 17 0.016 1 9.9 2.2 1 23 913 935 913 935 0.97
Sequence Information
- Coding Sequence
- ATGTCAACTAAATCAGAAGAATCCGGAAGTGAATATGATGATAATAGTGATGATAGTGATTACAATGATAAACAGTCTCTAAAATCACAAACAAATTGTAGTAAAAGAACTGGAACCAAAAATACTCAGTTTAATTGCAAGTTTTGTGGAAAAAAAGTGCCAACTAATGTTAAACGAAAAACTCATGAAGATAGTTGTCTGCATAAAAGAACCGCTGTAACAGTTTTACAAGAAGGTGCTGTTAAATTTCTGTGCCAGATTTGTAAGCAAACATTCAAATATTTGACTGGACTCACGAGACATGAACGAAGGCACGAACCACCGGGCGGCTTTATATGCAAAATATGTGGGGAACATTTTATCACTGATTTACAACGAGTGCAGCACAAAGATGATGTGCATAAGATTTACAAATGCCAATTATGTGAGGAGAAATTCACCAAGGAGACAGAGTACACTGAACACACACATCTTGTTCATGATGGAAAAAAGAAAGATTATGTGGTTTGTTCTGATTGCGGTCAACAATTTCGTTCTGCAGTTCAACTTAAGCATCACACATTTTCAAAATGTGGCACTGAAAAGTCATATTCCTGCGAACAATGTGGCTCAAAGTTTATGACACAGAATACACTAAACGCCCACAAAATGATACACATTGgtgaaaaaaagcatttatgtaatttttgtgGCCACAGTTTTCTAAGCAAAGGACAATTAAAAGTGCACGAACGGAGTCATACTGGTGAAAAGCCATTTAAATgtgatatttgttttaaatcatTTGCATACCGTGAAAGTTTAGTGACACATTCATCCCTGCACACCGGTATTAAACCATATATATGTGAATCATGTGGAAGCCAATTTTCATGCAtaggtaatttaataaaacatcgaAAAGCAAGACCGGACTCTTGTGGTTTACCGCAATTcagtaaaaatactaaaatagcACCACGGGCAAGTGCAAAAAATCCTGGCAGTTTAACAATGAAATGCCAGAAAACGTTACCAAAAATTTCGCGTGGAccttataaaaagaaaaaaaataataatgaatcttTAGAAAGTAATGAAGAATTAACTAAAGATGAAATATCgtcaaatgaattaaataatattaatgaaaatgagacaaataattttataactaatTATTCAGATTTGAAAGAATATTCAACAATATCAGTAAATAAAGAAGTCGATACATATCATATAGTATATCCTGATGACAGCACAATAGAAACATCGGATTTAGAAGCAACAAACTCGCATGAACTGATATCAATACCGTCTGAAGCAATCACTGAAGAAGTAATAGTAAATGATGATAAAACTATTATAATAGCTAATCATAACtatgcaaataattataatataaatgataatttcacaacaacagccacaattataaatgattcggataataattataatttttgtaacaaatgGATTAATAATGAAGTTGACGAAAcaagtattatttataataatattaattatgataataattgttatgcaACGAATGATGAGAGTTTTAGTCAAGAAAATACTTTTGAAATAATTGAAGTTAAAGATGAAAACAAAATCGAggtTACCATAAGTGAGTATTTTAATGTGAAAGTCGAGGATGCGGTAACTGATGATAATACACCGCTATCAGCTTTGAAGGACCACTTgaatgataaaacaaaattagccAAGTCAAAaaaaagtaaaacaccTTCACCAATCACAACACcagatacaaaaaatttttcagaaaatatttcaaatgattatctaaatgataatgatgaaaaatattcGGGTGGAAGTGCACATAATTCTGATAATGATACTAACGATAATAATGAGGGATATGaacttattgattttttagaaGATAATGAAATTATATCaacgaaaaatgaaaaatcatatGAATGTCAGGTATGTTcgaaaaaatatacaacacAAAATTACTTAAACAAACATATAAGAACTGAACACGGTTTAAATAATGATACTATGGAGATTGTGGAAGTTGAAGAAAGTGAAAAAtgtgatgataataaaaataaatcttgtaaaaataataaacacagaaaaagcaaaggacattacatatgcagtatttgcaataaaaaatatattaatattaatttattagagaAACATGAATTATTACATGGACCCGAAGGGGATTTAATACACAAATGCATATGCtgcaaattgtattttaaaacgCAAAGAGAATGTGAAAAGCATCAAGTAAAATTCcatgaaaaaaaactaaaatgtgaggaatgtaataaaatattcaaggaGCCAGATAATCTTCAGGCTCACTTTCGTTTTGCACATAAAAGTGAAAATGATACATCGCCGACAATTCCAACAAAAAAGTATTCCTTTATGTGCCCGGTATGtggaaaacatttttcttcaaAAGTATCATTGAATGATCATGAAAGATCGGATTGTGGTAAATCACCAATCTATAAATGTGATACATGTGATAAATTATACCACAGTGCTGGCTCATTAAAAACACATCAAACAATTCATTCAGGCGTCTTGCCACATTTATGTAAATTCTGTGGAAAGGCATTTCGAACACAGGGACAAGTTAAAGTGCACGAACGTAGACATAACGGTGATAAACCATTCAAATGCGAAtaTTGTTCTAAGACTTTTGCTTATCGTGAAAGTTTATTAACGCATCATTCATTGCACACGGGCTTAAAGCGTTTTATGTGTCAAGCATGTGGTAATCGTTTCTCATGTATATCTAATCTGCAAGCACATCGACGCTCCCATAAAACAACCTGCGGGCGAATGCAATTAATGACAAAGGCAGTTGGTCCGATGGGAATAAATGACTAA
- Protein Sequence
- MSTKSEESGSEYDDNSDDSDYNDKQSLKSQTNCSKRTGTKNTQFNCKFCGKKVPTNVKRKTHEDSCLHKRTAVTVLQEGAVKFLCQICKQTFKYLTGLTRHERRHEPPGGFICKICGEHFITDLQRVQHKDDVHKIYKCQLCEEKFTKETEYTEHTHLVHDGKKKDYVVCSDCGQQFRSAVQLKHHTFSKCGTEKSYSCEQCGSKFMTQNTLNAHKMIHIGEKKHLCNFCGHSFLSKGQLKVHERSHTGEKPFKCDICFKSFAYRESLVTHSSLHTGIKPYICESCGSQFSCIGNLIKHRKARPDSCGLPQFSKNTKIAPRASAKNPGSLTMKCQKTLPKISRGPYKKKKNNNESLESNEELTKDEISSNELNNINENETNNFITNYSDLKEYSTISVNKEVDTYHIVYPDDSTIETSDLEATNSHELISIPSEAITEEVIVNDDKTIIIANHNYANNYNINDNFTTTATIINDSDNNYNFCNKWINNEVDETSIIYNNINYDNNCYATNDESFSQENTFEIIEVKDENKIEVTISEYFNVKVEDAVTDDNTPLSALKDHLNDKTKLAKSKKSKTPSPITTPDTKNFSENISNDYLNDNDEKYSGGSAHNSDNDTNDNNEGYELIDFLEDNEIISTKNEKSYECQVCSKKYTTQNYLNKHIRTEHGLNNDTMEIVEVEESEKCDDNKNKSCKNNKHRKSKGHYICSICNKKYININLLEKHELLHGPEGDLIHKCICCKLYFKTQRECEKHQVKFHEKKLKCEECNKIFKEPDNLQAHFRFAHKSENDTSPTIPTKKYSFMCPVCGKHFSSKVSLNDHERSDCGKSPIYKCDTCDKLYHSAGSLKTHQTIHSGVLPHLCKFCGKAFRTQGQVKVHERRHNGDKPFKCEYCSKTFAYRESLLTHHSLHTGLKRFMCQACGNRFSCISNLQAHRRSHKTTCGRMQLMTKAVGPMGIND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -