Pcon004894.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ptychoptera contaminata
Gene Symbol
-
Assembly
GCA_963942525.1
Location
OZ012636.1:47227730-47230833[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.3 84 3.9 0.2 3 23 236 253 234 253 0.79
2 12 1.3e-07 8.8e-06 25.8 1.4 1 23 258 280 258 280 0.99
3 12 1.5e-05 0.00097 19.4 0.1 1 23 286 308 286 308 0.98
4 12 6e-06 0.0004 20.6 3.5 1 23 314 336 314 336 0.99
5 12 5.6e-05 0.0037 17.6 3.1 1 23 342 364 342 364 0.99
6 12 0.15 9.8 6.8 1.6 5 23 607 625 605 625 0.92
7 12 2.1e-06 0.00014 22.0 5.2 1 23 631 653 631 653 0.98
8 12 0.00043 0.029 14.8 3.0 1 23 659 681 659 681 0.98
9 12 5.9e-05 0.0039 17.5 2.6 1 23 687 709 687 709 0.98
10 12 0.00014 0.0091 16.3 2.1 1 23 715 737 715 737 0.97
11 12 4.8e-06 0.00032 20.9 1.6 1 23 743 765 743 765 0.99
12 12 6.9e-05 0.0046 17.3 0.6 1 23 771 793 771 793 0.99

Sequence Information

Coding Sequence
ATGGAAGTATCGCCAGAACTAATGTGTAGATTATGTTTATCCACTGTTGGTATTATGGAAACAATATTCGACGataccaataaaataatatcggaaaaaatatttgaatgcACTGCAATTGAGatGGAAAATTTGTCTGGATTACCAACATCTGTATGTAATTTTTGCAAATCGAAATTGAATTTGGCATATAGTTTTCGTAAACAATGTATTGATTCTCATATATTGCTGATGCAGAAGTATAAAGAAATGATAAATactggaaaaataaaacttagcAAAAATGATCAAATACCAAAAATGGAAAGATACTCCAAGGATATAAAAAAAGAGGATACCGAATATTTAGAAATCGAAACGTTGGACGAAGACTTTCAAATGCCTGACAAAATCGATGATGAATTAATTGAGATTATCGATGAGGAGTATACAGATAATATTGACCCAATAAAATCAAGTGATGctagtgaaataaaaaatgaaacaattgtTGTGCAAAGAACGTCGAATCGTTTAAGTTCAAGATGCAAatcagaagaaaataaaagtacttTATTAAGTAGTGataattgcataaataaagaaaataaattagcaataaaaaaggaacaatcaaataaaattacagcaaAACGAAAACACCATatgattaagaaaaaaagcacatcTCCGGCTGTAATCGGACAAAAATTAGGAACACAAGTATGTCAAGTATGTGGCGCTGTTGTTAAATCTTTACGCCAACATATGTTGTCACATGGCGAGAAAAGATTCCAATGTAATTATTGTCCAAAAAAGTTTACACAAAAGGGTGCTTTAAACTACCATATAAATACGCATACCGGAGCGAAACCATTTGTTTGCAAGGAATGTGGAGCGTCATTTGTTAGCCCAAATTCTCTGAGTTCACACTTGatatcGCATACAACTGAAAGTAGATATAAATGCAACGACTGTGATAAATTCTTTCGTTTTTCCCATGGTTTAGCAGTGCATCGAAGATCACATACAGATGAAAGAAACTATAAATGCAATATAtgtcaatataaatttttaagaaaacAATCGTTGACGAAACATCTTCGTGTTCATACTGGTGAAAGACCCTACAGCTGTACAAAATGttcaaAAGTGCTTTGTAGATTATGTTTATCAAATGAAGGTAAAATGGagaatatattttgtaatgaCAATGATttacagaataaaatatatgattGCACATCGATTGAGATTATCAATATTGATGGAATCCCAGGAAATGTTTGTGAATTttgtaaatcaaatttaataatagctTATCGTTTTCGTGCACAATGTATTCGCTCAAATGAATTGCTTCATAAACAGTATAAAGATATTATAAATGCATATAGTGAAAAAAGTAATAGGAAATTTGAGAAAGCTACTCAAACATGCATAAATGTAGAAATTGTGGAAAATCTTATAccagaattaaaaacaattaaaaagccGAAAAGGAAACGAAAGGTGTCCAATTCTAATCTTGAAATAGAAGATGTGGAGGAAGAGTCACAGCAATTATTGACCACGCTTATTAATGATGAATTATTGGATAGTTTAGATGAAGAGGAGCCACAAGAAATACTAATAGACACGGCTAAAACAGATTTTCTAGATAACATGGATGATAATGAAGAATCGGAAAAGTGTTTGAGTGATACAGATATCCATAAAGTTACTGAATATGTTACTCGAAAAAAGTCCCAACTAGGGAATTgtcgaaaaagaaaattaagcgACACATTAGAGACAAGATACAAAATTGTTAATGGAGAGAAAATCACATATCATAAAATTTGTCAAATATGCGgaaaaatgcaacaaaattTACGTCAACACATGCTGGTGCACACAGGAGAAAAGAAGCATAAATGTCCTCATTGTGGCAAGGGATTTTCTCAACGGGGCAATTTCAATCATCATGTCAATATTCATACAGGCAATAAGCCCTATAATTGTTCACTGTGTGAGAAAACATTTTGTGATCCAAATTCCCGTAAATCACATATGGTAACGCATACAggtgaaaaaaattatcactGCGAAATATGCGGTAATTCGTTTGGTTATTCCCATACGCTAGCCGCACATAGACGGACCCATTCACAAGAGAGAAAAcatgtttgtaatttttgtgataaaccatttttaacaaagTACGGATTAAAGAAGCATGTAAGAATTCACACTGGTGAAAAACCGTATCAATGTGAATTCTGTTACAAAGGTTTTACCAGCTCTGGTAACTTATCAACGCACAGAAGAATTCATACGAAAGAAAGGCCATATAAATGCACAATGTGTGAAATGGATTTCGCATATCGCAGCGTATTAAACAGCCATATGAAAGTACATTCCGCAGGAAATGCTACTGATGATAATACATGTACTTCATGA
Protein Sequence
MEVSPELMCRLCLSTVGIMETIFDDTNKIISEKIFECTAIEMENLSGLPTSVCNFCKSKLNLAYSFRKQCIDSHILLMQKYKEMINTGKIKLSKNDQIPKMERYSKDIKKEDTEYLEIETLDEDFQMPDKIDDELIEIIDEEYTDNIDPIKSSDASEIKNETIVVQRTSNRLSSRCKSEENKSTLLSSDNCINKENKLAIKKEQSNKITAKRKHHMIKKKSTSPAVIGQKLGTQVCQVCGAVVKSLRQHMLSHGEKRFQCNYCPKKFTQKGALNYHINTHTGAKPFVCKECGASFVSPNSLSSHLISHTTESRYKCNDCDKFFRFSHGLAVHRRSHTDERNYKCNICQYKFLRKQSLTKHLRVHTGERPYSCTKCSKVLCRLCLSNEGKMENIFCNDNDLQNKIYDCTSIEIINIDGIPGNVCEFCKSNLIIAYRFRAQCIRSNELLHKQYKDIINAYSEKSNRKFEKATQTCINVEIVENLIPELKTIKKPKRKRKVSNSNLEIEDVEEESQQLLTTLINDELLDSLDEEEPQEILIDTAKTDFLDNMDDNEESEKCLSDTDIHKVTEYVTRKKSQLGNCRKRKLSDTLETRYKIVNGEKITYHKICQICGKMQQNLRQHMLVHTGEKKHKCPHCGKGFSQRGNFNHHVNIHTGNKPYNCSLCEKTFCDPNSRKSHMVTHTGEKNYHCEICGNSFGYSHTLAAHRRTHSQERKHVCNFCDKPFLTKYGLKKHVRIHTGEKPYQCEFCYKGFTSSGNLSTHRRIHTKERPYKCTMCEMDFAYRSVLNSHMKVHSAGNATDDNTCTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-