Basic Information

Insect: Ptychoptera contaminata
Gene Symbol: -
Assembly: GCA_963942525.1
Location: OZ012636.1:30875322-30879583[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0004 0.026 14.9 0.4 1 23 183 205 183 205 0.95

2 12 0.00014 0.0094 16.3 3.3 1 23 214 236 214 236 0.99

3 12 1.9e-05 0.0012 19.1 2.7 1 23 243 265 243 265 0.98

4 12 4.2e-06 0.00027 21.1 2.0 1 23 271 293 271 293 0.99

5 12 0.00069 0.046 14.1 1.1 1 23 300 322 300 322 0.98

6 12 5.1e-06 0.00034 20.8 0.4 1 23 328 350 328 350 0.97

7 12 0.0001 0.0066 16.8 0.5 1 23 356 378 356 378 0.98

8 12 1.1e-06 7.2e-05 22.9 0.6 1 23 384 407 384 407 0.97

9 12 3.4e-05 0.0023 18.2 1.8 1 23 413 436 413 436 0.97

10 12 3e-05 0.002 18.4 4.3 1 23 442 464 442 464 0.99

11 12 0.00024 0.016 15.6 0.6 1 23 470 492 470 492 0.94

12 12 0.034 2.3 8.8 0.1 1 22 498 519 498 522 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0004	0.026	14.9	0.4	1	23	183	205	183	205	0.95
2	12	0.00014	0.0094	16.3	3.3	1	23	214	236	214	236	0.99
3	12	1.9e-05	0.0012	19.1	2.7	1	23	243	265	243	265	0.98
4	12	4.2e-06	0.00027	21.1	2.0	1	23	271	293	271	293	0.99
5	12	0.00069	0.046	14.1	1.1	1	23	300	322	300	322	0.98
6	12	5.1e-06	0.00034	20.8	0.4	1	23	328	350	328	350	0.97
7	12	0.0001	0.0066	16.8	0.5	1	23	356	378	356	378	0.98
8	12	1.1e-06	7.2e-05	22.9	0.6	1	23	384	407	384	407	0.97
9	12	3.4e-05	0.0023	18.2	1.8	1	23	413	436	413	436	0.97
10	12	3e-05	0.002	18.4	4.3	1	23	442	464	442	464	0.99
11	12	0.00024	0.016	15.6	0.6	1	23	470	492	470	492	0.94
12	12	0.034	2.3	8.8	0.1	1	22	498	519	498	522	0.90

Sequence Information

Coding Sequence: ATGGAGATACCGGGAGATTCCTTTACTTTTGGCGCGACAACAAAGGGGCGTCCAACcgtattatatagaaattttgaGTATGTTAAAGCTCGTGAGAATAAGAATGGAGAAATTTATTGGCGTTGTAAAATGTTTGCAAGTTCCAAATGTAAAGTTAATTTGAAAACATTGCAAGATCAAATCATCAGTAACAAATATCAGAAACATAATCATCAAAGCAATATTTCAACATCATTGGCTCGTCTTGCAATCGCACAAATGAAGGAAAAGATGAATGAAACTTCTGCAACACCAACTACAGTTGTAGGAATAGTTTCTTGTAAACTGGATGATCATGTTCTACAGGCTTTACCGAAACGAGCATCTCTTTCTCGAAGTCTTCAACGTCACAGAAAAGCTGCATTGGCTAACAACGACGGCctGTATATTCGTGATGGTGAAAACTTTATATGCCAGATATGTCCGGATACACTAGAAGAAGAACAATTACAGTTTGATACGAAAGGTATGGTAAGCCATTTGAAAAAGGTACATAATATAACAAGCCATGTATGCGATATATGTGGAGCAAATTTCAAAAAACGTACAGAGCTTAGCGAGCATTTGGAGGATCATTTGCAAACAAATCAGAATGGTGAATTTCAGTGTACAACATGtaatagaatatttaaaaatttacgaTTATATCGCATACACAAGAGAATGCATTATTCAAACGTAAAAACTTTTAGTTGTGAACAGTGTCATAAGAAATTTGGttcaaataatttattaacggaACATATGAATATGCATACTGGTTCTCGACCATATAAATGTGATCACTGTGTTAAGGATTTCGCTTCGAAATACACTTTATCAGCACATATGAAAATACATTCAGAACGGCCACGGCCGTTTACATGTAAAGTCTGTAATAAATCGTTTTTGAGTGGACAAAACTTACAACAGCATGAAAAAATTCACACTGGTGTGAAAGGATATGTTTGTAATGTATGCGATAAAGCTTTTGGGACATTACATAATTTGACGGTTCATAAAATTGTACATTCGGGTTATAAGCCATTTATTTGCCGAACGTGTAATAAAGCATTTGCAAGAAGAGCCGAAATAAAAGATCATGAACGTACTCATACTGGTGAACGACCATTTGTATGTGACATTTGCAATGCTCGTTTTGcacaaaaatcaaatttacaaTCACACAAACGGGTGACACATTTCAATGATAAACGCTATAAATGCGATCAGTGTCTACGATCATTCAAGCGGAGAAGATTATTGGAATATCACATACGAGCAACACATACTGGAGAAAGACCATATAAGTGTCCTCATTGCTCGTCGTCTTTTGTTTATCCGGAACATTTCAAAAAACACGTTCGAATTCATTCTGGTGACAAGCCTTATTTGTGTGAAGTTTGTAACAAAGCCTTTAATAGTCGTGACAATCGCAATGCACATCGTTTTGTGCACAGTGATAAAAAACCGTATGAATGTTTAGTTTGTGGCCAAGGCTTTATGAGAAAACCTATATTATATGCTCATATGCAACAACAAGgaCATTTAAATGATACTATTGTTGTAAATCAACCAAGGATAACAGATGGTGAACATATTGTTTCAACAGATTCGAAACGTGAATGGTTAAAACAAAAGCATATATCAGAAGACAATGTTGATTATGaaggaaaagaaataattgagGAAATCGAATACGAAGTGGAACATATTGAGGATGATGAAGAATTACCAGAAGAAAACTTAATAATTGATGGTCAAGTGCAATTTACCGAAGAACAAATAACCGATGATCTAAATGATTTTGCAAATGTATCTTCAGAGCAAATCTTTGTGTCCGGCGACGAACACTTCATTGAAACAGAAAATGGTCCAGTGCAAATCGTACAAATACGTTTACCAAATGCTGATGGCAAAGATAATATGGCATGGGTTAATCTAGTATcccaataa
Protein Sequence: MEIPGDSFTFGATTKGRPTVLYRNFEYVKARENKNGEIYWRCKMFASSKCKVNLKTLQDQIISNKYQKHNHQSNISTSLARLAIAQMKEKMNETSATPTTVVGIVSCKLDDHVLQALPKRASLSRSLQRHRKAALANNDGLYIRDGENFICQICPDTLEEEQLQFDTKGMVSHLKKVHNITSHVCDICGANFKKRTELSEHLEDHLQTNQNGEFQCTTCNRIFKNLRLYRIHKRMHYSNVKTFSCEQCHKKFGSNNLLTEHMNMHTGSRPYKCDHCVKDFASKYTLSAHMKIHSERPRPFTCKVCNKSFLSGQNLQQHEKIHTGVKGYVCNVCDKAFGTLHNLTVHKIVHSGYKPFICRTCNKAFARRAEIKDHERTHTGERPFVCDICNARFAQKSNLQSHKRVTHFNDKRYKCDQCLRSFKRRRLLEYHIRATHTGERPYKCPHCSSSFVYPEHFKKHVRIHSGDKPYLCEVCNKAFNSRDNRNAHRFVHSDKKPYECLVCGQGFMRKPILYAHMQQQGHLNDTIVVNQPRITDGEHIVSTDSKREWLKQKHISEDNVDYEGKEIIEEIEYEVEHIEDDEELPEENLIIDGQVQFTEEQITDDLNDFANVSSEQIFVSGDEHFIETENGPVQIVQIRLPNADGKDNMAWVNLVSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -