Pcon006925.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963942525.1
- Location
- OZ012637.1:16015361-16018033[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00074 0.049 14.0 0.8 1 21 101 121 101 122 0.94 2 13 0.00056 0.037 14.4 1.1 2 23 168 190 167 190 0.94 3 13 0.6 39 4.9 1.0 1 23 196 218 196 218 0.92 4 13 0.00018 0.012 15.9 1.6 2 20 225 243 224 245 0.89 5 13 2.4e-06 0.00016 21.9 0.2 2 23 258 279 257 279 0.96 6 13 1e-07 6.7e-06 26.2 0.7 1 23 289 311 289 311 0.99 7 13 4.3e-07 2.8e-05 24.2 0.5 1 23 317 339 317 339 0.98 8 13 8.2e-05 0.0054 17.0 0.5 1 23 345 367 345 367 0.98 9 13 4.4e-05 0.0029 17.9 2.1 1 23 373 395 373 395 0.95 10 13 3.9e-06 0.00025 21.2 3.3 1 23 401 424 401 424 0.97 11 13 4e-05 0.0026 18.0 2.8 2 23 431 452 430 452 0.95 12 13 4.8e-05 0.0032 17.8 1.3 1 23 458 480 458 480 0.97 13 13 1.5e-05 0.001 19.3 4.9 2 23 487 509 486 509 0.95
Sequence Information
- Coding Sequence
- atgtcaacaAGAGCTTCGAAACGTCAGCAATTGAAAAAGGAggcaaatttaaatgtaaaacaaaaagcGAATAGCACGACAACATCCATAGTCAATGTTcaattaaatgacaaaaatgaGATTGAATTTTTAGAAGTGACTAACGATGAACAATCACAAGACAATAATCAATCTGAGGAGGAGGAGGAAGAGGAAGAAGAGAACAGTTTGTCTGAGGGTGAGAATGAAGAACCAGAACTTGTGGAAACATCAGATGGTCACATGAtgataaaaatcgaaaaagaaGCAACGGTTGTGGAACATGTCTGCGGCAAATGTAACAAATCATTTCAACTAATAAGTaGCCTTAAACGGCACCTTAATTTATGCAGAAATGCACCGAAAAAGGATATGAAACATCTAAATGAGCCTAAACCTACTTTTGATAAAGATGCACCTCCAAGCGAAAACACGTGCTATTGTTGTGGTGAAGATATTGAATCAGCTCATtcaGGACATATAAGATGTAATCATTGTCCAAAATCATTTAAAGGGTTATTAGGTTTagagaaacatttattttctttgcattCAGCAAGTACAAAATTCCCGTGCAAACTGTGCAATGCAACATGTCCAAATCAGAAGATCCTTAATCTACATAATGAATCGCACAAAAATGGTAAACCATTTGCGTGTATAAAATGTGGAAAAGATTTTACTCGTAAATACCATCTGGAACGTCATTTAGCACATACTGGATGTGATAAAACACGACCAAAAGTCGAATTGCCGTGTGAAGTTTGCAACAAAATTTTTTCACGAACCGATAATTTACGTGAACATTTGCGAGGTCATATGAGACAAACGATCAGACGAAAAGATTATCAGTGCACTTATTGCGATAAAGCATTCTATGGTTCTTCGTtactaaatattcaTATTCGTACACATACTGGAGAGCGACCCTTTTCTTGCGATCTGTGTCCTAAATCGTTCCCATCAAATGGTGCCTTAAGAAAGCATCGTCGCATGCACACTGGCGAAAAACCATATGTCTGCAAAGtgTGTGATGCTCGTTTTTCTGCTAAAGAAACATTAAATCGACATAACAAGATTCATACCGGGGAAAAACCCCACATTTGTACAGTTTGCGATAGACGTTTTATCCAAGCAACTCAATTGCGCTCGCATATGTTTTATCACACTGGCGAAAATGGTTTTCAATGTAATTATTGCAATCGTGCTTTTAACAGGAAGTCACGTTTAACCTCGCACATAAAGTACACACACGAAGGTGCAAAACCTTTGGAATGTCATCGTTGTCAGAAAACTTACACTAGCAAAGAGGATTTGACACGCCATTTAGATAATCACGATGGTGTCAAACGACACAGTTGTGTGACGTGTGAGAAAAAATTTTCCTCAAAGGCGGCACTCAAAATACACGAGCGTATTCATACAAAGGAGGAAAAATGTACATGTACCGAGTGCAATAAAAGCTTTATCCGCCTTGATTGCTTAATACGGCATATGCGTGCTAAACATCGTGACGTTTTAGTGAAAATAATGAATGATGCTGAGCAAAAGAAACTTAACAAGTCATTTCCGAATTTAGTTAAAGACgcattaataaacaacaatgaaGTGACTACTGAGGATGAGGAAGTCGAAGAGGATGAAGATAATAACTTAGAGTATGGAGAAATTGTTAATGATAACGACTTGCCGTCATCGTCaggagaaaacaaaaaagaaataaaattactaaatactaaaaaagatACAGTGGAAATTGAGGAAATTGTACCAAACGAAGATGAAGAGGAACAGATGGAATTTGAAGTATATGAAGAAGAGGAAGAAactaatgttaaaaaagaattatcagCAAATgctattaaagaagaaaagggcaataataaaaataaaaaagttgttGATTCTGACCAAGAGCAGGATGAagagattttaataaatgaggATACAATATTTATGGAtgacaaaacattaaaagatAGTATTGgtgatttattgaatttacttGTAGATGAGgagacattaaataattttgggtGGCCCATTACACCCGTCGAAGAGGTATTAAGTTCGGTCATTAAACATTGTGGCCATAAACCAGCCGATTACAATGATTGCATTGATTATACATCCAAAATGCgtgaaaacacaaaattactaTTTACCGTTGTTATTGATAATGaatcaataaaatcattacTTAACAATCATACTGTGGATGAGGTTATTTTGCATGTTTTAAAattggcaaaaaataaatag
- Protein Sequence
- MSTRASKRQQLKKEANLNVKQKANSTTTSIVNVQLNDKNEIEFLEVTNDEQSQDNNQSEEEEEEEEENSLSEGENEEPELVETSDGHMMIKIEKEATVVEHVCGKCNKSFQLISSLKRHLNLCRNAPKKDMKHLNEPKPTFDKDAPPSENTCYCCGEDIESAHSGHIRCNHCPKSFKGLLGLEKHLFSLHSASTKFPCKLCNATCPNQKILNLHNESHKNGKPFACIKCGKDFTRKYHLERHLAHTGCDKTRPKVELPCEVCNKIFSRTDNLREHLRGHMRQTIRRKDYQCTYCDKAFYGSSLLNIHIRTHTGERPFSCDLCPKSFPSNGALRKHRRMHTGEKPYVCKVCDARFSAKETLNRHNKIHTGEKPHICTVCDRRFIQATQLRSHMFYHTGENGFQCNYCNRAFNRKSRLTSHIKYTHEGAKPLECHRCQKTYTSKEDLTRHLDNHDGVKRHSCVTCEKKFSSKAALKIHERIHTKEEKCTCTECNKSFIRLDCLIRHMRAKHRDVLVKIMNDAEQKKLNKSFPNLVKDALINNNEVTTEDEEVEEDEDNNLEYGEIVNDNDLPSSSGENKKEIKLLNTKKDTVEIEEIVPNEDEEEQMEFEVYEEEEETNVKKELSANAIKEEKGNNKNKKVVDSDQEQDEEILINEDTIFMDDKTLKDSIGDLLNLLVDEETLNNFGWPITPVEEVLSSVIKHCGHKPADYNDCIDYTSKMRENTKLLFTVVIDNESIKSLLNNHTVDEVILHVLKLAKNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01276403;
- 90% Identity
- -
- 80% Identity
- -