Pcon005971.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- Zfx
- Assembly
- GCA_963942525.1
- Location
- OZ012637.1:10125957-10130131[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.4e-05 0.00091 19.5 2.8 1 23 156 179 156 179 0.97 2 19 0.002 0.13 12.7 4.0 1 23 185 207 185 207 0.96 3 19 0.00013 0.0088 16.4 3.7 1 23 213 235 213 235 0.97 4 19 2.3 1.5e+02 3.1 1.9 2 23 261 282 260 282 0.91 5 19 0.0019 0.12 12.8 6.3 1 23 288 310 288 310 0.97 6 19 0.0002 0.013 15.8 0.5 1 23 316 338 316 338 0.98 7 19 3.7e-06 0.00024 21.3 1.7 1 23 344 366 344 366 0.98 8 19 0.00041 0.027 14.8 4.4 1 23 372 394 372 394 0.97 9 19 0.0023 0.15 12.5 0.5 1 23 500 522 500 522 0.97 10 19 0.0068 0.45 11.0 4.3 1 23 527 549 527 549 0.97 11 19 1.5e-06 9.9e-05 22.5 4.1 1 23 555 578 555 578 0.98 12 19 4.8e-05 0.0032 17.8 1.5 2 23 585 607 584 607 0.90 13 19 0.0043 0.28 11.6 1.2 1 23 613 635 613 635 0.98 14 19 3.3 2.2e+02 2.6 2.8 1 23 649 671 649 671 0.78 15 19 0.0015 0.096 13.1 2.2 1 23 677 699 677 699 0.98 16 19 6.9e-05 0.0045 17.3 1.9 1 23 705 727 705 727 0.96 17 19 8e-07 5.3e-05 23.4 3.4 1 23 733 755 733 755 0.98 18 19 2.1e-07 1.4e-05 25.2 1.9 1 23 762 784 762 784 0.99 19 19 2.9e-05 0.0019 18.5 2.0 1 23 790 812 790 812 0.98
Sequence Information
- Coding Sequence
- atggaTGCTAACCATTTTTGGGTTAATGTTTGTCGTGTCTGCGAAACAacatcaaatttaaaaaatttatttaatgaggaAAATGaatctattttgaaaaaactAAAGGCTTGTGCTAACATAACAATTGCCGAAGACGACGGATTACCAaatcaaatatgttatttatgtatagaaaatttaGACAATGcatattcatttaaaacattatGTGAATTCAGCGACCAAAAGTTTAgagAAATTTCCAACAATATAGTTGAAATTAAACTAGACAATGTAAATAACCAAGATACTTTATTTGATGAAAGCAATGTTATAGTTGAATTCGAATATAATGATATACAGTTAGATGATTACACAAATGTGGAACACTTAATAGAGGAAGATAATGGTATTGATGAAGATCTTGAAGAATTATCAtcgttaaataattgtaatgaagaaaatattgaaggtttaaaattatttaattgcgaTCAATGTAATAAACGTTATTCAAATCATGGTAATTTAGATCGGCACATAAGGGTATTTCACAATAAAGAACGCTATCATGTTTGTGATAAATGTGGTAAGAGTTTTTCACAAATGCATATACTAAAGCAACATTACACTGTGCACATCGATGAAAGAAATTTCGAATGTGAAATATGCCATAAGAAATATAAGACACAAGAATACCtaaatttgcataaagatAGACATAAACCTGTTGAACAgcgaacaattaaaaaatacaaatcctctataaataagaaaaagccaACGATTAAAGAATGTGTTTGTTCATTTTGCggtaaaatatcaaatagtGTTGCATTACACCAAAGTCATGTTAGAGTGCATACAGGAGAAAGGCCATATGAATgtcataaatgttataaaacttTTGCATTCCATCAATCTTTAAAAactcatttattattacacacaggtgaaaaaccatttaaatgtGATACTTGTGGAGTAGCCTTTCGACAAATTGGACATTTGCAAGGGCATAAATTAGTGCATACAGGTGAAAAAGTGCACAAATGTAGTGTATGCAGTAAAACATTCGCTTTACGTGGAAATTTGACAGTTCACATGAGACTTCACACAGGTGAAACCCCCTATCATTGTACAAAATGCTCTAAAAAGTTTTACGATTCAAATGGTTTAAAAAGGCATAAAATTGTACATTTAAAAAGAGAATCACTTGATCGATATATTAAAGATATGGAAATAGAAGAGAATGACGATagcataaatcaaaataaaatattagaagATACTTTTGAAGTAAAATTGGACGAATGTATGTCAATTTCAAATATAGAATTAATTCAGTATGAATCAGCTGatataaaaaccataaatgAAATCAACTATGTAAATGAgtacagtaataataaagaagatacTAATAATGAATCAGTATCAAGTGATAGTTCagatatgataataaaaaagaaaaatacatattctacaagaaaattaacaaaggtAAAAGCAACATACGCCTGTCAAACTTGTGACGCAGTGTACTCAAAatataatgatttaataaaacacaataaatcaCACGGTGTACAAAGATTTCAATGTAAAACATGCGATAAATGGTTTCGTAGATACTGTGACCTAAAAGTACATGAAAATAATCATACTGGTATATTAGAATATAAATGTGAAAAGTGTGACAAAAATTTCACTCGTCAATGTAATTTGGATCGtcatataaaatcaatacatAATGACGAAAAACTATGTAAATGTGAAATATGTGGCAATGGTTTCAGAAGATCATCATCATTACGGCAACATTTATATGCTGAGCATAAGgacttattaaattatgaatgTGATATATGTCTTGAAAAGTTTACCCaagatatatatttacaatatcATAAGAAGCGGCATAATTCAAAACGTATTAAACcagttaaagaaacaaaagagTATATTTGCCATTATTGTGGGCAAAAATCATTAAGTATCAGTCAGCATCAGATACATGAAAGAACGCATACAGGTGAAAGACCATTTGAATGCAATGTTTGTAGTAAGAAGTTTATTTGTAGACCGCAATTAAGAACTCACATGTTAATACATACAGGTGAAAAACCgtataaatgtataatatgCAATAAGGCATTTAGACAACGGCAACATCTAAAAAGCCACATTGTTGTACATACAGGAGAAAAACatcataaatgttttatatgtgATAAAACATTTACCGTAAGATCAAGTTTAAATGTGCACATGAAATCGCATTCCGGAAGAAGGCCACAATTTAAATGTACAACTTGTGATAAATCATTTACCGTTCGATCCAGTCTTAATGTACACTTAAGGTCACATACTGGAGAAACACCGTACCATTGTAATATATGTCCACAAAAATTTAGTgatatcaaatatttaaagaggcatttattaatacatttaaaaaatcaaattgatgttagtattgaaaataatgaagaatctaattcaaaaataaatgtaaataattttgttgccCAAAATGTAAATCAACATGTGCCAACAGAGCAGTCTTTAAATGTTGATGAGTGTGTTGTAGAACATTCACATTCAATTGTAAATATTACCGATTCATTGATAAGTGGAGCAcagattaaaacagaaaattaa
- Protein Sequence
- MDANHFWVNVCRVCETTSNLKNLFNEENESILKKLKACANITIAEDDGLPNQICYLCIENLDNAYSFKTLCEFSDQKFREISNNIVEIKLDNVNNQDTLFDESNVIVEFEYNDIQLDDYTNVEHLIEEDNGIDEDLEELSSLNNCNEENIEGLKLFNCDQCNKRYSNHGNLDRHIRVFHNKERYHVCDKCGKSFSQMHILKQHYTVHIDERNFECEICHKKYKTQEYLNLHKDRHKPVEQRTIKKYKSSINKKKPTIKECVCSFCGKISNSVALHQSHVRVHTGERPYECHKCYKTFAFHQSLKTHLLLHTGEKPFKCDTCGVAFRQIGHLQGHKLVHTGEKVHKCSVCSKTFALRGNLTVHMRLHTGETPYHCTKCSKKFYDSNGLKRHKIVHLKRESLDRYIKDMEIEENDDSINQNKILEDTFEVKLDECMSISNIELIQYESADIKTINEINYVNEYSNNKEDTNNESVSSDSSDMIIKKKNTYSTRKLTKVKATYACQTCDAVYSKYNDLIKHNKSHGVQRFQCKTCDKWFRRYCDLKVHENNHTGILEYKCEKCDKNFTRQCNLDRHIKSIHNDEKLCKCEICGNGFRRSSSLRQHLYAEHKDLLNYECDICLEKFTQDIYLQYHKKRHNSKRIKPVKETKEYICHYCGQKSLSISQHQIHERTHTGERPFECNVCSKKFICRPQLRTHMLIHTGEKPYKCIICNKAFRQRQHLKSHIVVHTGEKHHKCFICDKTFTVRSSLNVHMKSHSGRRPQFKCTTCDKSFTVRSSLNVHLRSHTGETPYHCNICPQKFSDIKYLKRHLLIHLKNQIDVSIENNEESNSKINVNNFVAQNVNQHVPTEQSLNVDECVVEHSHSIVNITDSLISGAQIKTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -