Pcon003172.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- zfy1
- Assembly
- GCA_963942525.1
- Location
- OZ012636.1:24905388-24908706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.017 1.1 9.7 0.4 1 23 13 35 13 35 0.95 2 18 3.6e-06 0.00023 21.3 0.6 2 23 41 62 40 62 0.97 3 18 0.0049 0.32 11.5 0.4 1 23 68 91 68 91 0.98 4 18 1.5e-05 0.001 19.3 2.8 1 23 114 136 114 136 0.97 5 18 0.00043 0.028 14.8 3.3 1 23 142 164 142 164 0.99 6 18 1.5e-05 0.00097 19.4 6.2 1 23 170 193 170 193 0.97 7 18 0.00019 0.012 15.9 2.0 1 23 203 226 203 226 0.95 8 18 4e-05 0.0027 18.0 1.1 1 23 333 355 333 355 0.98 9 18 4.2e-05 0.0027 18.0 3.1 1 23 361 383 361 383 0.99 10 18 4.2 2.8e+02 2.2 7.4 1 23 418 441 414 441 0.92 11 18 1.4e-05 0.0009 19.5 0.7 1 23 481 503 481 503 0.97 12 18 2.4e-06 0.00016 21.8 1.6 1 23 509 531 509 531 0.97 13 18 0.0098 0.64 10.5 3.4 2 23 541 562 540 562 0.97 14 18 0.053 3.5 8.2 8.2 1 23 568 590 568 590 0.98 15 18 2.3e-06 0.00015 21.9 1.4 2 23 899 920 898 920 0.97 16 18 0.00022 0.015 15.7 3.8 1 23 926 948 926 948 0.98 17 18 8.9e-05 0.0059 16.9 1.4 2 23 956 977 956 977 0.97 18 18 0.00018 0.012 16.0 4.8 1 23 983 1005 983 1005 0.97
Sequence Information
- Coding Sequence
- atgacaaaacataaaagtaaACATCTTAAGAAGCCACACCAATGTGAAAAATGTCCTGAAACATATAATATTCTtgatAATCTTGTTTTGCACAACGTTACCCAtagtaaagaattaattaaatgcccCAAATGCGATAAGTACTTTAATCGATTGTCCAGTTTACGGGGAcacattaaaatacattttaaaaatgagTACTATACTTGTGTATACTGTGaggaatattttattcatgaatcattAATGGTAGAACACATAAGTACAGTGCATAGTGgcatcaaaaaaattaatacgaaTGCTCTTAAGCGCCATAAAGATGTAAAAAGAAGCAGAAAACATATTTGTGACGTTTGTAAAAAGGTATTTACAAAGCCGTGTCTCCTAGAGCGTCACCTTCGCATACATTACAACACACGACCGTATAAATGTGAATTATGCTATAAAGCCTTTCACCAAATGGCGACATTGCAAATGCATTATCGAACTCACAATGGAAATAAACCGCATAAATGCCCGCATTGTTTTCAATGTTTTGCACAAAAAGGGAATCTCAATATTCACATGAAACGTGTTCACGCAGCGGCGGATAATCCTGATAAACAATATCCATGTTCCTATTGTACATGCATTTTTAGCCAGCTAGGCTCATTAAATCGACATATATCACAATACCATCCGAATTTCAAACATCACCATAATATACAGGAAACTGATAACTTTGATTATAATGTAAATCAGGTTATTTCGCAATTGCAACAATTACAAGTTCCAGAAAGTGgcattaattatgataatatttgcaaaataacaaatacgACGAAACAATTACCTATTCAACAGCctgataataaaaacgatgaGTTTTCAGCTGACTGTACAACCGAAAATAAATCTTCTTCACAAACGTGTATCATTAAAATGGCAGATCGTTTACCAAATGGAAAAATTGAGTTTCGAACTGTTGAGCAgcgaattattaacaatacccgtgtatttatttgtaagtATTGCTCAAAGGTGATGAAACGACCATCGGACTTTCTAAGACATCTGCGTGTACATACTAAAGAGAAACCATTTGAATGCACAGTATGTCATAGATATTTTGCCATAAAGAGCACTCTTAGTACTCATATGCGTACGCACGATAATAAAGTATATAAGATGAATTCCTCAAGTCGACCTAATATAAAGAGTATAGAAGATTTAAATGATCATATACCaattaaagaaaatcataaatgtaaatttcatTGTACTGATTGTACAATACAGACATTTAAAAACTATGATGAGTTAGACGAACATAGAAAGCAGCATACAACACCTACAAAAAATTTAGCTATAGAAAAAGATGAACCAGTAAcattagatttattaattgcgaaaaaaaaatctaaaagaaaattatttactggTGCTGATAAGCATCGACCTTTTGCATGTGATATTTGCCACGCATCTTTCAGACAAACTGATGATTTAAATTCCCACATAATGTCCCATATGAACCATCGTTTATTCAAATGCAAAATATGTAGCAAAAGCTTTTCAACAGAGTCCTTACTTAACATTCACAAAAAAGCGCACTATACAGTTATAAGCACTAAATCACAGACATGTCAAGTgtgtttgaaaaattattcgtCAGTGAATTGCCTTAAGCGTCACATGAAAGagcataataacaatataatgtACATGTGTAAGTATTGCAAAAAGTTATTCaaacgaaaattttattgtcgTCAACACATCAGGCTACATAGATTAGAAACAGTTAACACTGACCACAAATCAGAGGAAGAAATGACAATTGTTATTGATTATACAGCAAATAAGCCAATCAGCGATGAAATTGAAATAGTGATCAATAATGAAGACCAAGTATTACTTGAGAAAGAAAATTGCACGAACATTGTTACTAATTTGGATGATATGAATTCTACGATGGATCCAAGTCAAGTTATTGTTTCTGAATGCGTTGAAGAAAAAgataatacttttaaaatcGTAGAAGACACAGTTCCATTGCACCAGACAGATGACTTTGAAATACCTTCAGATCCAAACGTGCTTAAATACTTTCTTATTGTAGACGAtcaaattgtattgataagcGAAGAACAACATAAGCAAATAACCAGAGAGATTGAGAACTCTGAAGAATCTAatataaatcaacaaattatATTAGAAAGCGTTGAGTTTCAACCTTTCACAGCAAAGACTTTATCATCCGGCAGTGATTTAACAATCTCCTTTGATAAAACCCTAGAAGATAACTGTGTTGATCATTACCTCCAATTAACAAGCCTAAACTTAGAAAGCGATAAACTCGCAACATTTGAGAATCGAAATAAATCTGAAGTTTTTTTAGATGGCATTGAATGCTATGCGGACAATAATGATGTGCCGGTCAatgagtttaatttaataaatacaaatcataAATCACTGGTAAAATTGATAAGTCCTAAAATCAATCAGGATCAAAATGAGCGGAAAACAGCTGTCAGTGATAAAACAATCGAATTTATATTGCAGCCAATAAGAGAAGAAGATTGTGAAACAGAAGATAATccggatatttatttaactttaaatagaGATACAATTCAAGATGAAATTGCatcatttaatgaaaatgttgAAACAAATTGTAATGATAAAAGCACAACAAAACTTCTTCAATGCCCGCATTGTCctaaaacgttaaaaaaaccCATTGATTTGAAGAGACATTTGCGTACGCATACAGGTGAGCGACCATTCAAGTGTACAATTTGTGATAAATCGTTCGCACTATTATGTACGTTGAAGACACACAAAAAGGTACAcacagttaataaaaaaatcgaagAATGTCATGTatgtgcaaataaattttctagtaAAGGTAGTTTACGGATACATATGCGTATTCATTCTGGTGAGAAACCACATAAATGTCCTTACTGTCCACAGACATTTCGTACGTCTGGTCATCGAAAGTCACATCTGAAAGGTCACTTAAAGCAAGCAACTGCGAAGGGTATACATCCCGCCGACACAAAACCAAGAAATGGCAAATTATCACATTTAATCGAAGCATTAAATGAACGTTTCAACAAGGATTGA
- Protein Sequence
- MTKHKSKHLKKPHQCEKCPETYNILDNLVLHNVTHSKELIKCPKCDKYFNRLSSLRGHIKIHFKNEYYTCVYCEEYFIHESLMVEHISTVHSGIKKINTNALKRHKDVKRSRKHICDVCKKVFTKPCLLERHLRIHYNTRPYKCELCYKAFHQMATLQMHYRTHNGNKPHKCPHCFQCFAQKGNLNIHMKRVHAAADNPDKQYPCSYCTCIFSQLGSLNRHISQYHPNFKHHHNIQETDNFDYNVNQVISQLQQLQVPESGINYDNICKITNTTKQLPIQQPDNKNDEFSADCTTENKSSSQTCIIKMADRLPNGKIEFRTVEQRIINNTRVFICKYCSKVMKRPSDFLRHLRVHTKEKPFECTVCHRYFAIKSTLSTHMRTHDNKVYKMNSSSRPNIKSIEDLNDHIPIKENHKCKFHCTDCTIQTFKNYDELDEHRKQHTTPTKNLAIEKDEPVTLDLLIAKKKSKRKLFTGADKHRPFACDICHASFRQTDDLNSHIMSHMNHRLFKCKICSKSFSTESLLNIHKKAHYTVISTKSQTCQVCLKNYSSVNCLKRHMKEHNNNIMYMCKYCKKLFKRKFYCRQHIRLHRLETVNTDHKSEEEMTIVIDYTANKPISDEIEIVINNEDQVLLEKENCTNIVTNLDDMNSTMDPSQVIVSECVEEKDNTFKIVEDTVPLHQTDDFEIPSDPNVLKYFLIVDDQIVLISEEQHKQITREIENSEESNINQQIILESVEFQPFTAKTLSSGSDLTISFDKTLEDNCVDHYLQLTSLNLESDKLATFENRNKSEVFLDGIECYADNNDVPVNEFNLINTNHKSLVKLISPKINQDQNERKTAVSDKTIEFILQPIREEDCETEDNPDIYLTLNRDTIQDEIASFNENVETNCNDKSTTKLLQCPHCPKTLKKPIDLKRHLRTHTGERPFKCTICDKSFALLCTLKTHKKVHTVNKKIEECHVCANKFSSKGSLRIHMRIHSGEKPHKCPYCPQTFRTSGHRKSHLKGHLKQATAKGIHPADTKPRNGKLSHLIEALNERFNKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -