Pcon014481.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- -
- Assembly
- GCA_963942525.1
- Location
- OZ012639.1:29067393-29069993[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6 1e+02 3.6 2.8 3 23 160 181 158 181 0.86 2 14 0.00012 0.0077 16.6 0.4 2 23 187 209 186 209 0.95 3 14 0.00023 0.015 15.6 4.0 2 23 217 238 216 238 0.97 4 14 0.0024 0.16 12.4 0.2 3 20 249 266 247 268 0.93 5 14 5.7e-06 0.00037 20.7 5.2 1 23 397 419 397 419 0.97 6 14 4.1e-06 0.00027 21.1 2.6 1 23 425 447 425 447 0.97 7 14 6.5e-07 4.3e-05 23.7 2.6 1 23 452 475 452 475 0.97 8 14 5.8e-06 0.00038 20.7 0.6 3 23 487 507 486 507 0.98 9 14 9e-05 0.0059 16.9 0.8 2 23 513 534 512 534 0.97 10 14 2.4e-06 0.00016 21.9 0.4 1 23 540 562 540 562 0.96 11 14 4e-06 0.00026 21.2 0.8 1 23 568 590 568 590 0.98 12 14 2.6e-06 0.00017 21.8 1.1 3 23 598 618 596 618 0.96 13 14 6e-07 3.9e-05 23.8 0.5 1 23 624 646 624 646 0.98 14 14 0.0088 0.58 10.7 1.6 1 23 651 674 651 674 0.97
Sequence Information
- Coding Sequence
- ATGGCGACTCAATCAGTGATTGATATAAACAAAGTTTGTCGGACTTGCTTAAAAGAAGGATATACTATGAAATCTGTGTTTTCAGAGGAGTCCCCTGAATTAACAATAGCAACAATGATAAAAACTTGTACAGTGACTGAtgtaTCAGAAACTGATGGTTTGCCACCGCTTATATGTTTACAATGTATACATGATATAACATTAGCATATAGATTTAAAGAACAATGTGAAAAAGCATATCAAActcttttattaacaaaaacaaaaagtgattatgaaaaaaatcaaacaaatatatCTAGTGATATTGGACAAGAAAATAGTATAATGGATTTTACTTCAGACATAAttagtattaaattaaaaaatgaaaatgcacACATTTTAGGAAAAACTAACAATAATCTAACAAATAAAGAAGACTTGTATCAGGAGTATAGTGATTCTGTACAAATCATTGAGGCTGTTGTACATTTATGCGTATTTTGCTGTAACAATTTTGATACAGAGAAAGATTTAAagatacATATTAAAACTGTTCATAAAAATGATCCAATTAAATGTCAAATATGTACAAGAGTTTTTTCCCGTATAAATCCTTTGAAAAAACATATGGAGAACGTCCACCctgaaatgtttaaaaaaaataaatgtcatatttgtaataaagaattcacaaatataaatgatttgcACAGTCATATGAGTTTACACGATTGTATCGCATTATCAGACGATATGAATTGTTCAATATGCAAGATGACTTTCAATGATGAAACATTGTTGAAAGTACACCAGGAAAATTGTAAAGAAGTCATAAACCTAACCGAGCATATAATTGAAgatgataattttaaatcagaTTTATTCAATGAATCTGGATTGAGTATGGAAGACGATATGCAGTTTAAATGTGAACCAGATGAATTGTATAAGGATTCTTATGAATTAGATAGTGATGGAAAAGACAGACTTAATGATTCCGAAGATGATTTTGATTTACAAACGGAGGAGATTAATATTAATCCTAAACGTAAACGTGGTCGCCCAAAAAAgacagaaaatttaaatttatcaagtAAGTCCAATGAAAGTGATAAACTTTCATGTGAACAATCTACTgaagaaaattatgataatgaaGAAGCTACAAATAACACAGAGAATCAAAAGAAATCCAAAAGGTCTCACGAATGTCAGAAATGCAGTAAAACATTTACAAGAGCGGCCCACTTGCGACGACACGAAATGACTCATTCCGAGATAAAGCCATTCGAATGTAAAACATGTAACAAACGCTTTACACGTGTTGATCATTTAAACATTCATATGGCGCAGCATAATGATAAGCTGCACGAGTGTGAACTCTGTCCAAAAGGGTTTACAAGAGCGGAACATTTAAAAAGACACATGGAAACCCGTCACACGAATAAACAACCAATtaccaaattagaattttgtaCTATTTGTAAAAAAGGTTATTCTACAGCCAAATATCTACAAATTCATATGCGAGTACATtcggataaaaaattaacatgtaAATTTTGCCCAACTTCATTCGAAAGCAAGCAGGAATTAAATGAACATGCAAAAACACACGTAAATGAACGACCTTTTTTGTGCTCCGAATGTGGTCTACGTTTTGTGAGGAACGACTATCTGGTTATTCATATGAGGCGGCATAAAGGTGAAAAGCCatacaaatgtaaattttgtGATAAGGGCTTTCCGCGTGCAACAGATCTCACTGTCCATGAACGGTATCATACAGGTGAGAAAACACATTTATGCACCACATGCGGCAAAGGTTTCCAACGTGCCTATAATTTGCTTGTACATATGAGAGTACACACAGGCGAAAAACCCTATCCATGTCCACACTGTCCGAAAAAATTTGCACAAGGTAATGATTTGAAGGCACACATCAGACGGCACACTGGCGAGCGATATAAATGTGATTTGTGTAATGATGGATTTATTCAAGGTTATCACTTAACGCAGCATAAACGAAACGTTCATGGCATCGACATGAGATCGCACATAAGGCGAGTGGAAAAGTTTATACCATCAGGTAGACAGGATGCTGCTTCTGGAAAACAGCATAATGAAAGTACAGAGAGCCAAGACGAATCTATTGAGTTACAACCTTTACAAGTAATTAGGGAAAACGAATCTTCTGAAACTTATACAATAATATCGTTAAATGCATCACAAAATTCgTCAATACCAACATTGATGCCCCAACAGAATACAGTATCACTAAATTCTGTAGACGTAAAAGCGGAAAACGATCAGGAACATCATATTTTCATGCCGCAAATAATTGATacacaaataacaaataatatgccattacaattattttcgcAAATGCatcaaaaagttaaattaccccagcattatcaataa
- Protein Sequence
- MATQSVIDINKVCRTCLKEGYTMKSVFSEESPELTIATMIKTCTVTDVSETDGLPPLICLQCIHDITLAYRFKEQCEKAYQTLLLTKTKSDYEKNQTNISSDIGQENSIMDFTSDIISIKLKNENAHILGKTNNNLTNKEDLYQEYSDSVQIIEAVVHLCVFCCNNFDTEKDLKIHIKTVHKNDPIKCQICTRVFSRINPLKKHMENVHPEMFKKNKCHICNKEFTNINDLHSHMSLHDCIALSDDMNCSICKMTFNDETLLKVHQENCKEVINLTEHIIEDDNFKSDLFNESGLSMEDDMQFKCEPDELYKDSYELDSDGKDRLNDSEDDFDLQTEEININPKRKRGRPKKTENLNLSSKSNESDKLSCEQSTEENYDNEEATNNTENQKKSKRSHECQKCSKTFTRAAHLRRHEMTHSEIKPFECKTCNKRFTRVDHLNIHMAQHNDKLHECELCPKGFTRAEHLKRHMETRHTNKQPITKLEFCTICKKGYSTAKYLQIHMRVHSDKKLTCKFCPTSFESKQELNEHAKTHVNERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCDKGFPRATDLTVHERYHTGEKTHLCTTCGKGFQRAYNLLVHMRVHTGEKPYPCPHCPKKFAQGNDLKAHIRRHTGERYKCDLCNDGFIQGYHLTQHKRNVHGIDMRSHIRRVEKFIPSGRQDAASGKQHNESTESQDESIELQPLQVIRENESSETYTIISLNASQNSSIPTLMPQQNTVSLNSVDVKAENDQEHHIFMPQIIDTQITNNMPLQLFSQMHQKVKLPQHYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -