Pcon011849.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ptychoptera contaminata
Gene Symbol
-
Assembly
GCA_963942525.1
Location
OZ012639.1:1704357-1708328[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0013 0.083 13.3 0.8 1 23 218 240 218 240 0.97
2 20 1.8e-06 0.00012 22.2 2.1 2 23 247 268 246 268 0.97
3 20 2.6e-06 0.00017 21.8 0.3 2 23 275 297 274 297 0.96
4 20 0.0011 0.07 13.5 1.7 1 23 345 367 345 367 0.97
5 20 8.7e-06 0.00057 20.1 2.8 2 23 374 395 373 395 0.97
6 20 4.3e-05 0.0028 17.9 0.9 3 23 403 424 402 424 0.97
7 20 0.00012 0.0076 16.6 0.4 1 23 504 526 504 526 0.97
8 20 0.00013 0.0087 16.4 2.0 2 23 533 554 532 554 0.96
9 20 0.00013 0.0084 16.4 2.6 3 23 562 583 561 583 0.95
10 20 0.0021 0.14 12.6 3.0 2 23 641 662 641 662 0.98
11 20 0.2 13 6.4 1.6 1 23 754 777 754 777 0.96
12 20 0.00015 0.01 16.2 0.4 2 22 788 808 787 808 0.94
13 20 1.6 1e+02 3.6 3.3 1 23 817 840 817 840 0.74
14 20 1.6e-05 0.001 19.3 2.8 2 23 858 879 857 879 0.96
15 20 1.4e-07 9.4e-06 25.7 1.8 1 23 886 908 886 908 0.98
16 20 9.1e-08 6e-06 26.4 1.7 3 23 920 940 918 940 0.96
17 20 2.3e-05 0.0015 18.8 2.8 1 23 946 968 946 968 0.99
18 20 1.2e-06 7.8e-05 22.8 2.2 3 23 976 996 974 996 0.97
19 20 2.1e-06 0.00014 22.1 1.3 1 23 1002 1024 1002 1024 0.99
20 20 0.0065 0.43 11.1 0.0 1 23 1030 1054 1030 1054 0.93

Sequence Information

Coding Sequence
atggataatatgtttttattagattatgattataatttaatgaaattatgtaGATTGTGTTTAGTAGAATCTAGTAAATTAATTCCAATATTTGATAATGAAAATGAGGGAGAGACAAGAATGCTAATTGAACGATTAATGGCTTTTTCACAAATAATGattaaTGAAGAGGATGGCATGCCAACAAAAATATGTGAACCGTGCACTTTACAATTGAACAGTGcatatgattttaaattaaaatgtgaaCAAAGTGATGCTACCCTTCGTGAATATATGTTGCGCAAGAATTTAGATAATCAGGATAATTTCTTAGATAATCGAGAGAATGAAAATCTTGATgaggattttaatttaactataaaaCCAGAGATTACATTTTTAGAAGTTGATCCATTAAATGAGAATAATTTCTATTGTGACGAGGATTACAGTAATTATCCAGAGTTTGACGATGATGAAGATGATGGAGGTATTGATGAGGATTACGAAGAGGATGATTGTGACCAAGAAGATGATGAAGATGATTCTGACTATGATGAAAATGAGGATAACAATTCTAATACAAATGGCAATGAGGATGATGACAGTAAACAAAAAGATGATATTGATGAAGTTGAtataaaaaaggcaaaaactaAAGACGGTCGTTATGCTTGCCATTTATGTGATAAAACATTAGGTGATCCTAGAAgattaaaattgcatttacgTTTGCATACAGGACATAATTTAAAACGATGCACAATATGCAATCgaggTTTTGCCACACAAAGTCATTTATCACGACACATGTTGATACATGCAAAAGACAGAAGCAAAATGTGTAAGCGTTGTGGCAAAGTATTTCCAACTCCAGAAGAATTAAGAGAACATATGAGTACAAGCCATAGCACAAGGATAAAAAAGGAGCATACAAATAGTTCATCAGATACACCATCAAGTACTTTGAATGATACAAGAGacaataatgaatttaatatcgATATAAATTGTATAGATTTAAAGAAAGCAAAGACAGCAAATGGGCGCTATGCATGCCACTTATGCCCTAAAACTTTAGTTGATgctaattgtttaaaattacatttacggTTACATACCGGGCAGAATTTAAAACGATGTACTATATGCAATCGagGTTTTGCAAAGCAGAATCATTTAACACGTCATATGATGATACATGCAAaagataaaagtaaattatgtaaaagatGTGGTAAAACATTCGAATCTAcagatgaattaaaattacacaTGGATACCAGTCATTTTTCAAAGACAAAAGTAACACCAGTAAAATCATCGGCAGCGATTACATCCTATTGTAatactataaaaaaagaaattgattCAAATGAAAGTATTAACATTGATAACGATagcaatgaattaaataaagaaacagatAATGAACCAATGAATATTGATGAAAGTATTGAAGAGGAAAAAGtcgatgataaaataaatgaggATGATTTACTCAAGGCAAGAACGGAGGATGGACGTTACGCTTGTCATTTATgtgataaaacattaattgacCCGAAAGGTTTGCAACTACATTTGCGTTTGCATACCGGACAGAATTTAAAACGATGTACAGTGTGTAAACGtggttttgttaaacaaaatcatttaattcgtCACATGGTGATACATGCAAATGATAAGGATAGAATATGTAAGCGTTGTGGACAATGCTTTGATTCAAAAGAAGACTTAAAAACGCATATGGAGAATAATCATCAAGCGAAAAGTAAATTAACGTCTTCAGCAActgcatcatcatcatcatcgttaaataaAAAACGGGGTAGACCTCCAATACGTGAAAGTATTtcaaatgataatgataataaagatgGAGATACATCGAACAATGAtacatcaataataaataataataatacagtcgCAAAGTGTAAAATTTGTGATATaacatttcataaaatttatttactacgtcaacatttaaataagcataaaaatattgaatcaaTTAAGCATatagatttaaaaaagaaaaatttcttattcgatataagtaaaattgatataaatgcATCAACAAatgatgatttaataaattatataattaatgaaattgataataatgagACAAATATTGTATTCTATCAGATAAATAATAGTATTGGTGATGAAATGTATATAACCGATTCAGAATCAGATGATGATGGTGTTGGAACTACCGaacataataattcaaatgttgataaagaaaagaaattaaatttctattcatgtgaaatatgtaaatttgtaTCTAAtcataagaaattaatatttgagcATATAGATAAGGAGCATATACATAATGATttccttaatttaaaattggtaTGCAACTATTGTCAGAAAATGTTTCCAAATTATGATCtgtataataaacatataaaacgtgattgtgaaaataaattaaaattgcacaAATGTAAAATATGTAATCGTAAATTTTTATGGGACAATAGTTTGACGAGCCATCtgaaaatttatcataaaataaataatgataataatgagttgataaaaaataaggaGAAAAATTGTATCTGctatatatgtaataaaacgTTTTATCGCCAAGAGAATTTAGATcgtcatttaaaaattcatagtCCTGCTGAAAAGAAATTTGAATGTACCGTGTGCGAGAAGAAATTTAATCGCAAAGATAATTTACGTTCACATATGAAAATACATAAACCGAATCGTGAGGAAGGTGATAAACATTTATGTGTTTATTGCGGGCGTAGTTTTTCAAATTCATCAAATTTAATTGTGCATATGAGACGGCACACTGGTGAAAAACCGTACAAATGTGATTTATGTGATAAAGGATTTCCACGTTCATCCGATTTACAATGTCATAGGCGTACGCATACTGGTGAAAAACCCTGCCTATGTACAATATGTGGAAAAGGTTTTTCACGTTCTAATAAATTAGTTCGTCATATGCGAATTCATACAGGAGTTCGTCCATACAAATGTATGTACTGTGAACGAGCATTTACCCAATCAAATGATTTGACATTGCACATAAGACGGCACACTGGAGATAAACCATATGTTTGTGGTATATGTGGTGATCGTTTTATTCAGGGTACGGCATTACAAGCACATCGTCGTATGCAGGGTCATTATGAGGAAAATACATCATCACCATTCTCCAATATAAGTGTAAATAATCCAAATCGTTATACAAATGCAAATCGTGTGAATCGCATTGGATTGTTTACGACACAATCAACGACAATAACAACAGCACATACAACAACTGTAACATCATCAATATCACCATCGACAAGTACTGCGACAAGCACATCAGCatcgaataatattaataataatcgaaatataaaacaagaagacgaaaatatacataatacaGTAGGACCATCATCACGTTTAGTACAACCAAGAATGCAAccatcagcagcagcaataaTGCCATCAACATCATTCGGTTTAACAAATAATCCAACATATATACCAAATGGTATGCCATTCTTATCAAACACTGGTGtattaatgcaaaatttaGAAGTATCAACATTATTATCAGCATATAATCAAAGTTACAATTGTTCATATAATACAggtacaaattaa
Protein Sequence
MDNMFLLDYDYNLMKLCRLCLVESSKLIPIFDNENEGETRMLIERLMAFSQIMINEEDGMPTKICEPCTLQLNSAYDFKLKCEQSDATLREYMLRKNLDNQDNFLDNRENENLDEDFNLTIKPEITFLEVDPLNENNFYCDEDYSNYPEFDDDEDDGGIDEDYEEDDCDQEDDEDDSDYDENEDNNSNTNGNEDDDSKQKDDIDEVDIKKAKTKDGRYACHLCDKTLGDPRRLKLHLRLHTGHNLKRCTICNRGFATQSHLSRHMLIHAKDRSKMCKRCGKVFPTPEELREHMSTSHSTRIKKEHTNSSSDTPSSTLNDTRDNNEFNIDINCIDLKKAKTANGRYACHLCPKTLVDANCLKLHLRLHTGQNLKRCTICNRGFAKQNHLTRHMMIHAKDKSKLCKRCGKTFESTDELKLHMDTSHFSKTKVTPVKSSAAITSYCNTIKKEIDSNESINIDNDSNELNKETDNEPMNIDESIEEEKVDDKINEDDLLKARTEDGRYACHLCDKTLIDPKGLQLHLRLHTGQNLKRCTVCKRGFVKQNHLIRHMVIHANDKDRICKRCGQCFDSKEDLKTHMENNHQAKSKLTSSATASSSSSLNKKRGRPPIRESISNDNDNKDGDTSNNDTSIINNNNTVAKCKICDITFHKIYLLRQHLNKHKNIESIKHIDLKKKNFLFDISKIDINASTNDDLINYIINEIDNNETNIVFYQINNSIGDEMYITDSESDDDGVGTTEHNNSNVDKEKKLNFYSCEICKFVSNHKKLIFEHIDKEHIHNDFLNLKLVCNYCQKMFPNYDLYNKHIKRDCENKLKLHKCKICNRKFLWDNSLTSHLKIYHKINNDNNELIKNKEKNCICYICNKTFYRQENLDRHLKIHSPAEKKFECTVCEKKFNRKDNLRSHMKIHKPNREEGDKHLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDLCDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYKCMYCERAFTQSNDLTLHIRRHTGDKPYVCGICGDRFIQGTALQAHRRMQGHYEENTSSPFSNISVNNPNRYTNANRVNRIGLFTTQSTTITTAHTTTVTSSISPSTSTATSTSASNNINNNRNIKQEDENIHNTVGPSSRLVQPRMQPSAAAIMPSTSFGLTNNPTYIPNGMPFLSNTGVLMQNLEVSTLLSAYNQSYNCSYNTGTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-