Pcon004610.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- lola
- Assembly
- GCA_963942525.1
- Location
- OZ012636.1:42737245-42739431[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.8e-13 1.3e-09 37.5 0.0 2 45 394 437 393 437 0.92
Sequence Information
- Coding Sequence
- ATGGGTAGCAGCGAATGTCAAACGTATTGCCTTCGATGGAACAATCACAAATCAAATTTAGTCTCAATATTAgatgcattaataaaaatggaaagtTATGTTGATTGCACAATATATGTTGATAATCAAATACAATTTAAGGCGCATCGTGTTATATTGGCAGCAAATTCACCATATTTTCAAACAATATTACAGGATGTACCAATGGACCACTGTAGTATATTGTTTCCGGGTGTACAGGAATTTGAAATGCGTGCCCTTTTAGAGTATATGTACACTGGTGAGGTGAATGTTACACAATCACAGATACCGCGTATTATGAAAATTGCTGAGCAATTAGAGGTGAAGGGACTATTCGATATGCATGATTTTAAGGATAAATTTGAGAAATTGGATGAGCCGATACAtcacaataatcataataatcatcatacTCCAAGTTATAATCATCTTCATCATTtgcatcataataataacaacagtaaTAACACAACTTCTGCGGCGACGACGTCCACAACATCAGCTGGTCACACGACCAAAGCATCAAATAATCAACAGTCGCCACCAATCATATCCACATCGACGAATATTTCGTCGGCACAGAGTAGCAGCTCGTCTCCGCCCTATAGTTATAAATCGCCGTATTCTAGTTTATATTCACCATCAGCTGCCGATCGTATGCCACAATGGCCGCCTTCTATAGCGGCCCATCTGCCCACAACGATGCCGACACAACACTTGCAGTCTACCGCCGCAGCAATGTTGAGTTCCGTCTATGAATCGGGGTCCGATATGAATCCATTGAAACGAAAGAAATTATCGTCAATATCGAGTATGTTGATGTCACGAGATACGCCAATTTTACGAAATGTCCTTGCCCAACCAAATGCTGCAGACTCATCGCAATCTATCCCATTAGACTACAAAAATCAATCGTCATTGAGTGGTGAAAGAGAACGCGGTTCAGATCGGGAACGTAACAGCAGCCATTCCAATGGAAACACAGACTATTCAGATCGGaAGTTAAAATATGAAGAACCACATTCACCACACACAGACAAATCATTTGAAGATGACGCGATGGAGTCACctcaaaattacttaaatgatTCCAGAATTGCTCAATACGTACCGTCATCACAACAGAAACCAGAGTGGAAGCGCTACAAGCAATATACAAGAAATGATATTCTATCAGCTATTGAATGTGTACGAAATGGAATGAGTGCATTGCAAGCGTCTAGGAAATTCGGAGTGCCATCAAGAACTTTGTatgataaagttaaaaaattaggAATCACAACTGGTCGCCCAATGAATCGTACAATGAAGCGTAGTCCCAGCAGTGGAAGCAGCCCAGCATCTTTTCCTTATGGAATTAGCGGTACAAGTAGCCCATACAGTCATCACATGGGAGAAGGCCAATCGCATGCCCAACAACACGATCGTGACTCAGAAAGGGATCGTGATCGTGGTGACCGTGAGCATCACTCAACAATTCCTCATCCTGCGGCTGCTTTACTAGATGCGACATTCCTTCAGCAAGCATTAGAAGCAAGAGGTGGTGATATCGCTGGCCGAGAAGCTTTACATGCAATGGCATTTGTTGCAGTCGCACATGCAGCCGTTAATGGTATATCGACAAGTCCAGGAACACATGGCACAGCACGTTCACCCAGTCCCAACATTTTGATGAAATATATGCGTCAAAATGCAAGCCCCGTTGAACTAGAAAAGGAGAACAATCACAATAACCATCACAACAATCATCCGACCCATCACCATCAAATCCCATTAGATGACGATGAGGTTGAAGATTTATCAATGTCAAAGAATAAATCCGTATCACCAAGGATGCGTATTTCTGAAACACCATCACCAGCACCGACAATGATGGAGCCACCACCAGAGGCAACGTCATCCGATTCTCAATCGCCACTACCCACATCACAAGGTGTCATTGTGCCGCCCATGATAACTAAAGTTATACCGCCACCATTATCATCGTCTATAGACAACGAGAATAGATCAGAATCTGTATCACCGTCACCAATTGACACAACAAAGCGTTCTGTCGACGATTTTGTTAAAACCGAAGATGATTCAAgggattaa
- Protein Sequence
- MGSSECQTYCLRWNNHKSNLVSILDALIKMESYVDCTIYVDNQIQFKAHRVILAANSPYFQTILQDVPMDHCSILFPGVQEFEMRALLEYMYTGEVNVTQSQIPRIMKIAEQLEVKGLFDMHDFKDKFEKLDEPIHHNNHNNHHTPSYNHLHHLHHNNNNSNNTTSAATTSTTSAGHTTKASNNQQSPPIISTSTNISSAQSSSSSPPYSYKSPYSSLYSPSAADRMPQWPPSIAAHLPTTMPTQHLQSTAAAMLSSVYESGSDMNPLKRKKLSSISSMLMSRDTPILRNVLAQPNAADSSQSIPLDYKNQSSLSGERERGSDRERNSSHSNGNTDYSDRKLKYEEPHSPHTDKSFEDDAMESPQNYLNDSRIAQYVPSSQQKPEWKRYKQYTRNDILSAIECVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSGSSPASFPYGISGTSSPYSHHMGEGQSHAQQHDRDSERDRDRGDREHHSTIPHPAAALLDATFLQQALEARGGDIAGREALHAMAFVAVAHAAVNGISTSPGTHGTARSPSPNILMKYMRQNASPVELEKENNHNNHHNNHPTHHHQIPLDDDEVEDLSMSKNKSVSPRMRISETPSPAPTMMEPPPEATSSDSQSPLPTSQGVIVPPMITKVIPPPLSSSIDNENRSESVSPSPIDTTKRSVDDFVKTEDDSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01276365;
- 90% Identity
- iTF_01276365;
- 80% Identity
- iTF_01277061;