Pcon009028.2
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- bab1
- Assembly
- GCA_963942525.1
- Location
- OZ012638.1:2332611-2333907[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-18 1.3e-14 53.5 0.0 1 43 28 71 28 73 0.95 2 2 1.2 2.3e+03 -1.7 1.8 6 15 169 178 165 191 0.75
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGCTGGAATACAAATCAAAATCTGATACATCATTTGCGATTTCGTGAACGAGGACCATTAAAATCGTGGCGACCGGAAACAATGGCTGAGGCGATTTTTAGTGTACTTAAAGAGGGTCTATCGTTGTCACAGGCCGCCCGAAAGTATGATATACCGTATCCCACGTTTGTGCTGTATGCAAATCGTGTACACAATATGCTGGGACCGTCTATTGATGGGGGAACAGATTTACGTCCAAAGGGTAGAGGTCGTCCACAGCGAATATTACTTGGTGTTTGGGCGGATGACCATATAAAAGGTGTGATCAAAACGGTTGTGTTTCGCGATGCTAAGGAACTTAAAGAGGACGCCATAAATCTGGGCTACGGAAGGCATTCGcCTGTTTTCCCGTTCCAGGATGGTCCAATGGGATATCCAAGCGGATGCAGTAATGGATTGGGACCCCAACAAACGGTATCTGGTGCCGAATCGATGTCGCCAGAAGCCGCTACAGCAGCGGCCGTTGCTGCTGTGGCGCATGGAATACGACAACAAATGCAAATGGCCGCGGCAGCTCATCACCAAGATGCAGGCAATCTCGGGTTTAATTTGTCTGCACATTGTAGCGGACTGACAATACATCCcagcaataataattctacAGGATCTATACCAATGCCAAAATTAGGATCACCCGCTGCATCAGGTCAAATGAGCAACAGCGGAGGAAACGGTGTTAGTGGAATGCCCATACCGCGTATGGGTTCACCAGCGATTCCGGGCAATAATTCTGGACACGGTTTACATGGAATGTCCGGCATCGCGGGATTACCTCAATCACATAATTTGTCCAGCGGCTCAATGGGAAACAGTCATCATTCCCAGCTAACAATATCAAGCATAAACAGTGGCATTCATATTTCAAGGCTAAATTCTCCGCATGGCTCAGCGCATGACTTGCGAATGAATAGTCCCGATGAAAGTCCATTACATTCACCATTAGAATTAGCATTGGAACCAGCCGTCAATCTTGCCGTTGGTGTTAGCGGTATGACATATAAACCATCACGCGGTTATTCCTCACCGCGACCCGAACATTTATTTCAAGAGGACATTGCCGATCTAGTGGGTACACCACGTTCTTGCCCATCCagattaaatagttttaaggAGCCAACGTCCACAATTAAATTGGAACCATTATCAGAATGTCGAGGTGAATGA
- Protein Sequence
- MWQKCWNTNQNLIHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGVWADDHIKGVIKTVVFRDAKELKEDAINLGYGRHSPVFPFQDGPMGYPSGCSNGLGPQQTVSGAESMSPEAATAAAVAAVAHGIRQQMQMAAAAHHQDAGNLGFNLSAHCSGLTIHPSNNNSTGSIPMPKLGSPAASGQMSNSGGNGVSGMPIPRMGSPAIPGNNSGHGLHGMSGIAGLPQSHNLSSGSMGNSHHSQLTISSINSGIHISRLNSPHGSAHDLRMNSPDESPLHSPLELALEPAVNLAVGVSGMTYKPSRGYSSPRPEHLFQEDIADLVGTPRSCPSRLNSFKEPTSTIKLEPLSECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01276193;
- 90% Identity
- iTF_01276193;
- 80% Identity
- -