Pcon011269.1
Basic Information
- Insect
- Ptychoptera contaminata
- Gene Symbol
- retn
- Assembly
- GCA_963942525.1
- Location
- OZ012638.1:32270558-32278037[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.7e-17 1.6e-13 50.7 0.1 29 89 4 62 1 62 0.93
Sequence Information
- Coding Sequence
- ATGGCAAAATCTGTTTTGGatttatatgaattatataatttagttaTAGCACGCGGTGGTTTAGTcgatgttataaataaaaaattatggcaagaaataattaaaggaTTACATTTACCATCGAGTATAACTAGTGCTGCATTTACATTGCGTACACAatatatgaaatatttatatccgTATGAATGTGAAAAGAAGAATTTAAGTACACCAGGTGAATTACAAGCGGCTATCGATGGTAATCGTCGTGAAGGTAGACGTTCCAGTTATGGACAATTTGATTCACAAATGCAGGGACAATTACAAATgccACAGGTACAACGTTCACCGATACCTGGTGGTATGCAACAGATGTCACCATTATCATTGGTAACACATGGTAATACACCTGGTTCAGCGGCAGCAGCAGCGGCGGCACATCATCGTTTAATGGGCGCACCATCTGTCGGACAAATACCAAATTTAATGCCACAAGAAATCGAACAACGCATGATggaatacataaaattatttcaaacacCAAAGGAACACAATAAACGTAATGGTTCACAGAGTCCAGAGATATCACCGCGTGACGCCCTAAATGCATTAGAAATGTCACGCGTTGCACTATGGtcaatgtataataataatacaagtcCACCGACATCAATAAACACAAGTCCACCGGGTAATGAGCCACAACGTTTCGCCAATGAAttacaaatgttaaaaaatcaattattaacatCACACATTGTACACAATGAGGCATTAAATCTATCAGAATCACCGCCAACATCACAGTCAATGCAACAGACAACCGCACACACGACAACACAACATCACGGTGGTATCACAATAAAACGGGAACGCGATCAAATGGATTACAGTTCAATTGATCGTGATCACGATATAATACAGCAACCACCAGCAAAAAgaggaaataataatttaataaatagtaataataataataatatggatAATATGATGACCGGTTTAAATGATTCATCTCATATGGATGATGAGGATGACATTGATCATGATAATCATTTGAATTTATCACAACAGAATCATAtgttgcataataataataacaataatcatcGTCAAAGTAATAAGGGAAtgcataaaagtaataataataataatgatgagaaTGAAGAGgacgataatgatgatgatgatgaggaaAATGGaagtaatataaattcaaGATTATTACATCAACACACAAACAATCATTTATCGAAtcacaataatagtaataaaaattcatcaataaataaaaaatataatggacAGACAGAGAATAATCAGAAAaatcagcagcaacagcaacagcagcagcagcaacaacagcagcagacAATAAATGGTGGAATGCAGTTTAAAATTGCTAGTCgagggAGTGCATTAACCGGTGATCAACAATTAGTTGTTGCAATGGAATTTAATGGTACCTTATATGAAGGTGTATTATTCGCAAATAAAGTGACATCGTCAACGGCTATTGCAGAGGCAGCAACAACTGGTGGTAATAATAGTACAACCGCGGCAATACAGTCAATACCAACAACACCGGCTAGTCCAAAGGTTGCATCAGCCGCACATAATGGTATAATATCACCGACATCCGCTAATTTAACAGCAATAACATCACCAACTGGTAGAACAACACCggtaacaataacaacaacaacagtagcagcagcagcagcagtaacgTCAACTCCAACGACACCAGTTGCAGCTGCCGCAACTGTAACAGCAACAAATGTGGTTTcaccaacagcaacagcagcagcagcaacaattgGAATTAAACGCAATTCACTTGATGATAGAACGACGCGTGTTCCACATCCTCTGGTCtcatcataa
- Protein Sequence
- MAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPGELQAAIDGNRREGRRSSYGQFDSQMQGQLQMPQVQRSPIPGGMQQMSPLSLVTHGNTPGSAAAAAAAHHRLMGAPSVGQIPNLMPQEIEQRMMEYIKLFQTPKEHNKRNGSQSPEISPRDALNALEMSRVALWSMYNNNTSPPTSINTSPPGNEPQRFANELQMLKNQLLTSHIVHNEALNLSESPPTSQSMQQTTAHTTTQHHGGITIKRERDQMDYSSIDRDHDIIQQPPAKRGNNNLINSNNNNNMDNMMTGLNDSSHMDDEDDIDHDNHLNLSQQNHMLHNNNNNNHRQSNKGMHKSNNNNNDENEEDDNDDDDEENGSNINSRLLHQHTNNHLSNHNNSNKNSSINKKYNGQTENNQKNQQQQQQQQQQQQQQTINGGMQFKIASRGSALTGDQQLVVAMEFNGTLYEGVLFANKVTSSTAIAEAATTGGNNSTTAAIQSIPTTPASPKVASAAHNGIISPTSANLTAITSPTGRTTPVTITTTTVAAAAAVTSTPTTPVAAAATVTATNVVSPTATAAAATIGIKRNSLDDRTTRVPHPLVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -