Palb000808.2
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- stc
- Assembly
- GCA_961205885.1
- Location
- OY540801.1:5864683-5868076[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4 1.4e+04 -5.7 3.0 10 12 309 311 308 312 0.52 2 16 3.8 1.3e+04 -4.0 1.6 15 19 336 340 335 340 0.81 3 16 0.17 6.2e+02 0.2 0.3 4 10 369 375 368 375 0.95 4 16 1.8e-05 0.065 13.0 17.0 3 19 382 398 381 398 0.93 5 16 2.3e-06 0.0081 15.8 9.4 1 18 434 451 434 452 0.97 6 16 0.76 2.7e+03 -1.8 1.2 6 10 482 486 481 486 0.90 7 16 0.00035 1.2 8.9 12.3 1 19 492 510 492 510 0.93 8 16 0.76 2.7e+03 -1.8 1.1 6 12 541 547 541 547 0.91 9 16 3.5e-05 0.12 12.1 12.2 4 18 558 572 551 573 0.88 10 16 0.29 1e+03 -0.5 14.3 1 11 613 623 613 635 0.81 11 16 2.5e-09 8.7e-06 25.3 11.6 1 18 640 657 640 658 0.99 12 16 2.6 9.3e+03 -3.5 0.6 6 10 687 691 686 692 0.68 13 16 0.45 1.6e+03 -1.1 3.0 10 18 705 714 701 715 0.77 14 16 1.8e-05 0.063 13.0 11.2 1 16 751 766 751 776 0.94 15 16 5.5e-06 0.02 14.6 12.7 1 18 783 801 783 802 0.91 16 16 1 3.6e+03 -2.2 0.6 7 12 817 822 811 822 0.71
Sequence Information
- Coding Sequence
- atggataataaaaacacaaatgaatattataataattctaatgaaaataattatataaattttaatcaattcatATCACGTTATAACATAAATTCTACGCCtgaatttgattataattatgcgCCAGACAATTTTCAAAATGACATAAATAATCAGAATATGTTGCAACAACAACCTAGGcataaccaacaacaacaaatgcaacaacaacagcagcagcaacaaattGGGACACAACAAAATCCATATTATCAAGAACAATTTATTGCGGAAAATTCAGTTTTAACACCAACCGCAGCTGAATTTGTACCTAGTAATAGACGTTACGGTAATGACACTcaatataattacaataatgcAGTTTATGACAATAgattttcaattaatcaatCATCGAATTCCGGATTGACAAATGTTGAAAATGATTTCACTTCGGAGGATGGTTTAGCATCAGCCAATGGTTACTCTGAGCAAAGTGATGGAAATACAGGTGCTATTAGgaaatcatattcaaattcaAACGTACCAAAAATGCGATATAATAATAGAGTTTCGCATCGTcaatataatagaaattatgaTGAGCAACGGTATAGCAACGATCTTGATTATAGGGAAGAGCGAGTAggtaataatatgaataatacaacaaaaacaaggaaaaaacgGTACTATGATAAGGAGAAGAATGAACGGTACGGTGCGAATGATAATGATGACCGGTACGAAGCAGATAGcgattttaatcataaaaataatcacaatTCAAATGCGAATGCAACGAAAAAAACGAGTGAAATGAATAGAGTACAGCTGAGTACAAAATACACTCAACGGGAGAAGTTAATTCGCGAAATAGATAATGGAAAATTGGAGTGTTTAATTTGTtgtgataatataaaaacatttcaagcAATATGGCCGTGTCACAAGTGTTAtcacatttttcatttgaattgTATAAAACAATGGGCGAATACATCAACCTCAAAGGACGGATGGCGTTGTCCGGCTTGTCAAAATATAACCGAAGAGGTtccgaaaatttatttttgctattgtGGCAAAGTGAAGAATCCAGTTTATAATCGGAATGATGTGGCTCATAGTTGTGGTGAATTGTGTGAACGTTCAATACTTTGTGAGCATCCATGTACATTGCTTTGTCATCCGGGCCCATGTCCGCCATGTCAAGCGACAGTTACACGATTCTGCGGTTGTGGCAAAACGCAAAAATCATTGCAATGCAGTCAAAAGCAAAATGTCGAATGTCAATTGAATTgtgataaattattgaattgcGGAGTACATGTTTGTCTTAAGAAATGTCATGTGGGAGATTGTAATGATTGCGAAATAGTCATTGAGCACAATTGTTATTGTGGGAAGAGTAACAAAAGTGTCGCCTGCACTGTagacaataataaaagcttaaaatacTCTTGCGAGGAAGTCTGCAACAAAGACTTGACTTGTACAAATCATAAATGTGAGGAAATATGTCATGAAAAGGGTTGCAACGAATGTAAGTTGTCGCCCCAATTAGTAACAACATGTCCTTGCGGTAAAGTACCGATTGAGGAGGGTAGCCGGAAAAATTGCTTAGATCCAATAATcttatgcaataataattgcCACAAACCACTTAAATGCGGGCCCTTGGgtACGCCCCATGCTTGCACAAGTCGTTGTCATATCGGTGATTGTCCACCGTGCAACAAGCAAACCTCATTTAAGTGTCGTTGTGGaaatatgaatataaatgTCAAGTGTAAGCAATTACCACTGCCAGCAGAAGGAGTTAGTTGTAAAAAACGGTGTACGAAGAAACGTAATTGCGGCAAGCATAAATGCAATCAAGAGTGCTGCATTGATAGAGATCATATTTGCCCGTTACCATGTCCGTACACCCTGTTCTGtggaAAGCACAAATGCGATCAGACATGTCACAAGGGAAGATGTCTGCCGTGCTTTAGAAGTTCATTTGAAGAATTATACTGTGAATGTGGGGCAAATGTTATTTATCCTCCGGTGCCTTGTGGAACAAAGCGTCCTGCATGTGACAAACCTTGCTCTAGGCAACATGACTGTGATCATGCGGTTTTACATAATTGCCATTCCACGGCAACTTGCCCACCATGCATGGTACTTACGACAAAATATTGTTACGGAAAACATGAGCAACGCAAAACAATACCATGCAGCCAAAGTGATTTTAGTTGTGGGCTACCCTGTAATAAGCCCCTTAAATGTGGTCGTCATAACTGCATTAAAGCTTGCCATGCTGGGATCTGCTTGACTGGTAGCGACATTTGTAAGCAAAGTTGCACAAAATTACGTATTGACTGCGGTCATAAGTGCATGGCACCGTGCCACGAAGGCTTGTGCCCTGACACACAGTGCAaggaaaatGTCGAGGTACAGTGTGAATGTGGGAATCGTAAGCAGACCAAAACTTGTCATGATTTTTCAAATGAGTATCGCCGAATTGCCACCTCACAATTGGCGTCTTCAATGCAGCAAATGCAACTAGgaaattcaattgatttatGTGATATTTTAGGACCAATTAAActaaatggaaataataaaacCTTGGAGTGTAATGAAGATTGTAGAATGGTGGAGCGTAATCGACGTTTGGATATTGGTTTGCAAATTCGTAATCCAGATTTGTCAAATAAATTGCATCCAAAATATTCAGATTTCTTACGCGGCTGGGCCAAAAAGGATCCAAATCTCATTAAAAGTATCCACGAGAAACTAACTCAATTAGTAAAACTTGCGAAAGATAGTAAACAACGTTCTCGCAGTTATTCATTTCCGACGATGAATAGAGAAAAACGACAAGTGGTACATGAAATGTGTGGTATGTTTGGAATTGATTCCGTGGCATATGATGCAGAGCCAAATAGAAATGTTGTTGCTACAGCACATAGAGAAAGAacTTGGTTGCCTGGCATGAGTATTATGGAAGTATTACAGCGAGAAAGCGGTCAAAGAAGAATTCCGGTTCCAAACCTAAACGCTCGAATGAAAAAATAA
- Protein Sequence
- MDNKNTNEYYNNSNENNYINFNQFISRYNINSTPEFDYNYAPDNFQNDINNQNMLQQQPRHNQQQQMQQQQQQQQIGTQQNPYYQEQFIAENSVLTPTAAEFVPSNRRYGNDTQYNYNNAVYDNRFSINQSSNSGLTNVENDFTSEDGLASANGYSEQSDGNTGAIRKSYSNSNVPKMRYNNRVSHRQYNRNYDEQRYSNDLDYREERVGNNMNNTTKTRKKRYYDKEKNERYGANDNDDRYEADSDFNHKNNHNSNANATKKTSEMNRVQLSTKYTQREKLIREIDNGKLECLICCDNIKTFQAIWPCHKCYHIFHLNCIKQWANTSTSKDGWRCPACQNITEEVPKIYFCYCGKVKNPVYNRNDVAHSCGELCERSILCEHPCTLLCHPGPCPPCQATVTRFCGCGKTQKSLQCSQKQNVECQLNCDKLLNCGVHVCLKKCHVGDCNDCEIVIEHNCYCGKSNKSVACTVDNNKSLKYSCEEVCNKDLTCTNHKCEEICHEKGCNECKLSPQLVTTCPCGKVPIEEGSRKNCLDPIILCNNNCHKPLKCGPLGTPHACTSRCHIGDCPPCNKQTSFKCRCGNMNINVKCKQLPLPAEGVSCKKRCTKKRNCGKHKCNQECCIDRDHICPLPCPYTLFCGKHKCDQTCHKGRCLPCFRSSFEELYCECGANVIYPPVPCGTKRPACDKPCSRQHDCDHAVLHNCHSTATCPPCMVLTTKYCYGKHEQRKTIPCSQSDFSCGLPCNKPLKCGRHNCIKACHAGICLTGSDICKQSCTKLRIDCGHKCMAPCHEGLCPDTQCKENVEVQCECGNRKQTKTCHDFSNEYRRIATSQLASSMQQMQLGNSIDLCDILGPIKLNGNNKTLECNEDCRMVERNRRLDIGLQIRNPDLSNKLHPKYSDFLRGWAKKDPNLIKSIHEKLTQLVKLAKDSKQRSRSYSFPTMNREKRQVVHEMCGMFGIDSVAYDAEPNRNVVATAHRERTWLPGMSIMEVLQRESGQRRIPVPNLNARMKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -