Palb011106.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ptychoptera albimana
Gene Symbol
-
Assembly
GCA_961205885.1
Location
OY540805.1:12075746-12080902[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 8.5 4.7e+02 1.3 1.6 2 23 481 505 480 505 0.83
2 9 4.7e-05 0.0026 17.8 1.0 1 23 537 559 537 559 0.99
3 9 0.0032 0.18 12.0 0.4 1 23 567 589 567 589 0.97
4 9 1.6e-05 0.00091 19.2 0.3 1 23 598 621 598 621 0.96
5 9 7.1e-05 0.0039 17.2 1.4 1 23 629 652 629 652 0.97
6 9 0.18 10 6.5 1.0 2 23 661 682 660 682 0.95
7 9 0.04 2.2 8.6 2.6 1 23 687 710 687 710 0.96
8 9 1.8e-05 0.001 19.1 0.2 1 23 716 738 716 738 0.96
9 9 0.0001 0.0057 16.7 3.2 1 23 744 767 744 767 0.97

Sequence Information

Coding Sequence
ATGACTCAAATTTGTGAGAATGCTTGTCTTAAGCAAATATGCCGTTTATGTTACTGTGAGACAAATGATCTTATTGACATTTACACCGACAATGATTTGTttgatattgaaaataaaataattaaatatttatatctaCAGgtAGCCAGAGAAGATAATTTACCAAAAACAATATGCTGGATGTGCTCACAGCATCTAGAGacatttcataaattttccgaaaaaGTAAATGACATccaaaaaacagttttaaagGAACGTTATGAGTCTATTGTATTAAAGCCCATGCTACATAATTCAACCAATTTATTTCATACAAATTCCGATCATTTAGAAGTGGATCATGAGATTATACCTGTGTCGAATATTCTGAAAAAAGTAcaatcatataataataaagctagTGAATTACAATTacataacgatgaaatatatCATAAAGAGGATGCATCTGAGGAAGCATTTGATAAACCTCCAGAGAGTTTTGACATTAATATTTACAGTAGCGGGGAAACTATAGATCAATCAAATgtagaaaatgaatttaatgagGAAATTTTTGATAGTATAGATTATAAGCCAGTGAATAATGATAATCCGTCATTTTGTTCTGAAAATTCTGAGCTTGTGGAAAACTGTATATTGAATATAGATAGTAACAGTGTTCTGGGAAAGGATTCATATAGCGATGGAAATAAGGAAGTTGTTTCAAAACCGGaatgcaataaattaaatataaacgaaCCAGAAATAGTTAAACATAATACGCGTCAAACACGTTCAAAAACAATGACTGTGACTCAAGAATCtgaacaaaagttaaaaatagttGATAAACCAAAAAGACGTGGTCGTCCCAGAGCAATTAAACATAAAGCTAGTGAACAACATTCTCCAATATCATTTGAACACAATTCTTCATCAATTGTAGATTCTGAAATAGAGGATATGGAACTAAAAGATGATTTCTTTGATgccgatgatgatgataatgataaagattttataatatctgataagaaaaaatctgttattTCTATGAAAGATAGAGacagtgatgatgatgatgattactGTAAAGAGGTTTCGAAAAAGAAACGACGTGGTCGCCCAAAAGGTGTTCGAAATAAAATCGCTAAGAGTACATCAGataaacttaattttaatgatgatgaagattTCGAAAAGGATGAAACTGTCGATGAATCACCAATaagaattaaatcaaaaagatcttaTATGAAAAAGAATCGAGATTTACCACTGCATGATATTGATGAAGGCGAAAGTGATAATGAATTACCAGCCAGAGACTCAGATAATGAAGAGTGGCCAGCTCAAACCACATTAGATGGGTTTCCGGAAAAAATCCTTGATAATGGATTATTATTAGTGAAgggtaaaaaattaatcacaatGATATGCAAattctACAAACTTGAATGTGATATATGCAAAGAGAAACCTCGGTTTAAaCACTTGAGACTACTTTTCACGCATTACACCGAAACACATAATGAAGAGGGTTATGTATCATGTTGCCAAACCAAATTAAGTCGTTATCCAGCAATAATAATGCATATGGCAAGGCATTTACAACCAGATGCATTCAAGTGTAATATTTGTGGTTATATGGTAACACGCCCAAGATTCTTAGAGAGTCATAAGCAAACACATTTACCAGATGAACAAAAACCATATGCATGTGATCAATGTCCAAGACGATTTTGTTGGAAAGGTGCATTACAAATCCATTTAATATCCCATCAGCCAGttgatgaaagaaaattatatgtttGCCATATATGTGGGAAAGTttatgaCACACCTGGTGGACTATcaacacataaaaaattaattcatacaGATCGTAAAAATGAATCTCATGTGTGTCATGTTTGTGCAAAGAAATTCGCAACACGTACAGGGTTAAATGAGCATATGGCAACGATACATCAACCGCGTGAAAAAGATCAAGTGAAATGTGAAGAATGTGGAAAAtgGCTAATGAATAATCGGTGTTTAAAATCTCATTTGATTTTACATAGTACGGTCAcatataattgttatttatgtgattacaaaacaaagaagCGTATGCTGTTGAATCGTCATTCCTTAACGCagcatagtaataataaaccatTTATATGTAATATATGTGATAaggcatttaaattaaaacgagCGCTAACGGTACACATTGCCCagcataataatacaaaaagctATAAATGTACATTTTGTGATCGTGTGTTTGCCAgttcaacaaatttttatactCATCGTAAGAATATGCATCCCCGTGAATtacaagaaatgaaaaataaagagtTGGAAGAACAGagacaaaaaCGTATAAAAGCTGGtgttgaagtaaaaaaaatggatGAGGATTATATCAATAATTCGTTAGATGATGAGGATGATAAAGAGGATGAAATGCAACAGGAATGTGAAGATGGTAATAATCAAATCAGCATAACATTGCAAACAAACGATATCGATTCTTGTAATGAAATCCCAATGCCATTAAATGTACgaacacaacaacagcaaacaaataatgagcaaagattaattaattttcaattgcaACAACATGATCAGCCTGGTACAATTATTCGAAGTGATCAAATAATTGGTACGTTCCTACCTGGTACcagattattaacaattaatagtAATGGTGTTGTTATATCGACGACCACCGATGAATTATCATCACCAATGACTGTCGAAACACATTTACCAGCATTAAGAGGAActagtgaattaattaatacaaatgaacaatcaattattgttaatgttAATAGTGTACAAACGTTACAGCATGCATTACAACAATCACATTTATCTTATCaaaatgataacaataatagtacataa
Protein Sequence
MTQICENACLKQICRLCYCETNDLIDIYTDNDLFDIENKIIKYLYLQVAREDNLPKTICWMCSQHLETFHKFSEKVNDIQKTVLKERYESIVLKPMLHNSTNLFHTNSDHLEVDHEIIPVSNILKKVQSYNNKASELQLHNDEIYHKEDASEEAFDKPPESFDINIYSSGETIDQSNVENEFNEEIFDSIDYKPVNNDNPSFCSENSELVENCILNIDSNSVLGKDSYSDGNKEVVSKPECNKLNINEPEIVKHNTRQTRSKTMTVTQESEQKLKIVDKPKRRGRPRAIKHKASEQHSPISFEHNSSSIVDSEIEDMELKDDFFDADDDDNDKDFIISDKKKSVISMKDRDSDDDDDYCKEVSKKKRRGRPKGVRNKIAKSTSDKLNFNDDEDFEKDETVDESPIRIKSKRSYMKKNRDLPLHDIDEGESDNELPARDSDNEEWPAQTTLDGFPEKILDNGLLLVKGKKLITMICKFYKLECDICKEKPRFKHLRLLFTHYTETHNEEGYVSCCQTKLSRYPAIIMHMARHLQPDAFKCNICGYMVTRPRFLESHKQTHLPDEQKPYACDQCPRRFCWKGALQIHLISHQPVDERKLYVCHICGKVYDTPGGLSTHKKLIHTDRKNESHVCHVCAKKFATRTGLNEHMATIHQPREKDQVKCEECGKWLMNNRCLKSHLILHSTVTYNCYLCDYKTKKRMLLNRHSLTQHSNNKPFICNICDKAFKLKRALTVHIAQHNNTKSYKCTFCDRVFASSTNFYTHRKNMHPRELQEMKNKELEEQRQKRIKAGVEVKKMDEDYINNSLDDEDDKEDEMQQECEDGNNQISITLQTNDIDSCNEIPMPLNVRTQQQQTNNEQRLINFQLQQHDQPGTIIRSDQIIGTFLPGTRLLTINSNGVVISTTTDELSSPMTVETHLPALRGTSELINTNEQSIIVNVNSVQTLQHALQQSHLSYQNDNNNST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-