Palb006357.1
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- -
- Assembly
- GCA_961205885.1
- Location
- OY540803.1:21160130-21162326[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.18 9.8 6.6 1.5 1 23 163 185 163 185 0.96 2 13 0.14 7.7 6.9 0.5 1 10 190 199 190 205 0.96 3 13 0.0002 0.011 15.8 0.7 1 23 272 294 272 294 0.98 4 13 0.004 0.22 11.7 0.8 1 23 317 339 317 339 0.96 5 13 0.047 2.6 8.4 0.5 1 19 353 371 353 373 0.96 6 13 0.32 18 5.8 0.2 1 19 470 488 470 490 0.86 7 13 0.24 13 6.2 0.3 1 23 496 521 496 521 0.95 8 13 0.00031 0.017 15.2 1.5 1 21 527 547 527 548 0.94 9 13 2.7e-06 0.00015 21.7 1.5 2 23 556 577 555 577 0.97 10 13 4.7e-06 0.00026 21.0 0.9 1 23 583 605 583 605 0.97 11 13 2.2e-05 0.0012 18.9 3.8 1 23 611 633 611 633 0.97 12 13 0.00013 0.0073 16.4 1.5 1 23 639 661 639 661 0.97 13 13 1.5e-05 0.00081 19.4 4.2 2 23 668 689 667 689 0.96
Sequence Information
- Coding Sequence
- atggaaATGGAAGAATCGGAAAATCAAGAATATGGTTTGGAAATAAATTCACATGAAATATGTCGAACATGTTtgacacaagaaaaaaatttaaaaaatattttttgtaatgacATTGTCGATGGGAATATTGTAAATTTTCCAAGTATCTATGAATTTGTAACtggtttaaaaGTTAAAAAGAACGATGGATTTCctgaaaatatttgtatattgtgtaaaggaaaaattaacgacttatatatatttaaagagaAATGCAAGCGTTCATTTGAGTTACTACAGAAACTAATCAAGTCAAATGAAATAACATCGGAAAATGttgatattgaaaaaaatgataaattagatGAAGAATTTGAGAATCAAGATTACGAGGAGGCggatattattacaataaaatcggAATTAGCCAATAAAGATTTTCTTGAATTAGTCGatgataatatattatatgATATAATAGATAAAAGTTTACCAAACAGTTTTAAATGTGGAATATGTAATTTATCGCATGATACGTATGGAAAATACGAAAAACATATGGAAGATCATGAAAATGATcattataaatgttattacTGTCCAAAAAGCTTTCTAAATGACGTGTTACGTGACGAACATTTATCAAATGAACACAATCATGAAGATACTGAAAATTctagtaaaatattaaatccaacaataattaaatctttgtCAGAAGACGGTTCGTATGAAATTGAAACAATTAGAACAAGGTCAGAAAATAGTTCAATTGTGGACGAATGTGATGAATACATTGATGGCATTATTGATGATGAAAAAACCACATATGAGTGTTTAATTTGTAATGAAGAGTTCTCTAAtcagaatttatattttgaacaTTTGAAAAATCATGATATTTATGCAAATCAAGACAAGCctgtaaaaaataagaagcaaAAACGAGGAACATCTTCTCGATATAAATGTCCACTATGTAAAATTGTAGTAAAACATCAAGACCAAATAGATAAACACATTGAGTTTcatagaaaaacaataaatttagttCTAGATtcggtatatttttttaagtgtTCAAATTGTCGTAGCGTCTTCTATAATGCAGAACAGTTGGATAATCATTTTGCCCTAAATGAGGAAAGACTGTGCGTCCCATGCCCTCTTGATAAATCATGCACAGACTATCAATTCATTGAAGATGGAATAACGCCTAATACAACTAGTAATTCATCTGCAAAAATTTTGTGCTGTTTTAAATCAAAGACTAATATATTGCAATGTGAACAATGCTTTGAATATTCTGCAAATACAGTTGATGAAATTTTGAAGCATACAATTGAAAATCATTCTTCAGCAATAGAAGAATCAGAAACCTCGGTTTTATCTTCACCCATTAAAACCCAAGACGATGAGGCGCATCAGTGTGGCATTTGTAATTCAgttttttcaaatataaattctgCCAGActtcatgtttatttttatataaaatttttctcaTGTCCATTTCCAAATTGTGGCAGCGAATATGATAGTTTTGTCAGACTAAACAGTCACATGTATAAAGCGCATGCAATACAACACGAATACGTTTGTTCTTATTGTaatgaaaagtttaaaatgtATGATGAgctgaaaaaacattttaagttGGATTGTAATAAGCGTACGTTAAGTTGCACATACTGCGATAAAAAGTATATTACTCAATTCAGCTTAAATAATCATATGAAGATTCACACGCGTGAAAAGAAGTTCATTTGTCATTTCTGTGGCAAAGGTTTTATACAAAGCGGTGATCTGGCAACGCATCGTCGCTTACACACGggtgaaaaaccatttaaatgtACAATATGTAGTAAAACGTTTCGCACAGCTAGTCATCGCAAAGATCATATGACAGCGCATAACAACGATCGCCCATTTGAATGCAcgatatgtaaaaaaaaatttaagtcagAGCGTGTTTTAAAAAGTCATTTGGAGTTGCATTCGGGAAATAAGAAATGTGCATGTACAATTTGTGGGAGACGTTTTGCACGAAAACAGCATGTTACAGCGCACATGAAACGGCATTTACGTGAAAACACAACAGCGCAACAAATAAAAGAGGAAGAAGAGTttgaaaatgatgatgatgagtcacaataa
- Protein Sequence
- MEMEESENQEYGLEINSHEICRTCLTQEKNLKNIFCNDIVDGNIVNFPSIYEFVTGLKVKKNDGFPENICILCKGKINDLYIFKEKCKRSFELLQKLIKSNEITSENVDIEKNDKLDEEFENQDYEEADIITIKSELANKDFLELVDDNILYDIIDKSLPNSFKCGICNLSHDTYGKYEKHMEDHENDHYKCYYCPKSFLNDVLRDEHLSNEHNHEDTENSSKILNPTIIKSLSEDGSYEIETIRTRSENSSIVDECDEYIDGIIDDEKTTYECLICNEEFSNQNLYFEHLKNHDIYANQDKPVKNKKQKRGTSSRYKCPLCKIVVKHQDQIDKHIEFHRKTINLVLDSVYFFKCSNCRSVFYNAEQLDNHFALNEERLCVPCPLDKSCTDYQFIEDGITPNTTSNSSAKILCCFKSKTNILQCEQCFEYSANTVDEILKHTIENHSSAIEESETSVLSSPIKTQDDEAHQCGICNSVFSNINSARLHVYFYIKFFSCPFPNCGSEYDSFVRLNSHMYKAHAIQHEYVCSYCNEKFKMYDELKKHFKLDCNKRTLSCTYCDKKYITQFSLNNHMKIHTREKKFICHFCGKGFIQSGDLATHRRLHTGEKPFKCTICSKTFRTASHRKDHMTAHNNDRPFECTICKKKFKSERVLKSHLELHSGNKKCACTICGRRFARKQHVTAHMKRHLRENTTAQQIKEEEEFENDDDESQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -