Palb005575.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ptychoptera albimana
Gene Symbol
ZFY
Assembly
GCA_961205885.1
Location
OY540803.1:5420621-5423440[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00038 0.021 14.9 0.8 3 23 252 273 251 273 0.94
2 9 0.025 1.4 9.2 5.5 2 23 310 331 309 332 0.94
3 9 0.0004 0.022 14.9 0.1 1 23 699 722 699 722 0.95
4 9 0.00014 0.0079 16.3 2.8 2 23 729 750 728 750 0.98
5 9 0.00047 0.026 14.6 1.5 1 23 756 780 756 780 0.98
6 9 7.8e-06 0.00043 20.3 1.5 1 23 791 813 791 813 0.97
7 9 6.3e-06 0.00035 20.6 3.8 1 23 823 845 823 845 0.97
8 9 1.6e-06 9e-05 22.4 3.1 1 23 851 873 851 873 0.98
9 9 0.0003 0.017 15.3 0.1 2 20 884 902 883 904 0.93

Sequence Information

Coding Sequence
atggaTACAAAAGTTTTAACAATGATGAAACACGAGCCAGATGATTATTATCATCAGAAAAGTGCAtcgaattataaaaattataatatacaacaacagcaacaacctatatttaataataataataatgatgacgatgatgatgatccaTTTGGTGAAATAACAATACAGTTTGATGATGAAGTTCAAACATTATATGTTGGACCTGTTGAAATAAGTAGAACATCTCTTGATGGTGAGAAAGAGCAACATGaacaacagcaaacaaataaagataaacaaacaacaataacatctgatatgattaaaaataattttgatggtAAATTTACATTGTCTgatgaaataacaataataccaTGCAGTAGTAATGTAATACCAGTTAATCATACAATATGTAAACAAGCAACAGTTAACGAACAGCCAACAACAAAGAAGGTCCATCATCAAATGAAGATAACAACAAAGAAATCACCAatagataaaacaataataaaaaaacaaataaatgcgaATAATGATAAAgagattatatttaaaaaagagacAGATTTATCAAATGGTAGTGATAGTGGTATTGATGATATTATtgaaccaaaaataattaaaacaaataatgataatcaaaaaattccattaaatgaaaaagaaaacattccagataaatataaacaaacaatacaaatatcatcaccagtaaaaaaattaaaaataaaaacagatgaGATTTTAGATAAAACCGAATTGAAAATTTGTAATATATGTAATGCAAGCTTTTCACGTTTAACTAGTTTAAATTCACATAAACAACAATatcattcaaataataataataatacaaatttattaaatataaataaatcaacaggtaataataatataataaatgaggagaataatgataatgataatgataaacaTTCCATAAAGTGTACACattgtaaaatgaaatttaaaaggGATATATGGTATAAAagacatttaattaatcatcatggtattgtaattaataattctaatgataaaaaattaaataatggtaAACAAAATggattaattaagataaataataataataataatattaataataacgaagtAATTGAAGCAAcaggtaaacaaacaaaacaaacaaaggcaaatgagaaattattaaacactGCAAATGCTTTATTGCCAGCAATAGCACCAACATCAGTGACAACGACgatgacaacaacaacaaccacaataataacaaagaataCACCAGCACCTGTTGATGCGTCGTCAACTACAATAATTCCAAAAGATTCCGTGACACCATCAACGTCTTCAtcgaaaagtttaaaattccGTATAAGCGTAAAAAAGGatacgaataataaaatatcgaaATATTTTGAGAAAATTGGTAATGATAAGAATACAGAACTGGATAATAATGTTGCTGATaaagataatgatgatgatgaagatgagAAAAGTACTCAAATATATGATaatgatttaacaaaaataaaaattgataataatctggatactgataatgataataatattaatgaagatattaataaagaaaataatgataTTACAGAATCAAATGGGATtacattaataacaacaacagataCCTTAGCACCTGTTgagattataaataatgtttacacCGTGGagtttttaaatgataaagaaacGATGAATACTAGTGATAATAATTGTGACAACGTCGATATAAATATTGAGACAATGGATACTCTGAATAATGTTGAGATGGGCAATTATGAAAATGATAACAATGTGAATGGCGATGATGAATTAGAGACAGAAACAGATATACATGAAACAGAACCAGTGTTGGAAGTAAATAGATTGGATGTAGGGAATAGAAAGCAAAAAGTTGAAATTTCTGATGAGATTGAGGAagaggaaaaattattaaatgacatTGAATTGCCAATAAGTGAGGAAGCCTCAACGCCTTCAACTGTTCTTGTTGCTGATGATTTAGAGCCGCTTATATCACGTGAAACATCTGTTTGTAGTGATGAGACAAATCAAACATTACTGAAGGATGACGGCAATGATGAAATAAGTACCGATGGGAAAAAATACGTTTGCAAAATATGTGGTGCATCATTTTCGAAGCGTTACAGCCTTGGGCCCCACATAATGCGTGTTCACACAAAAGAAAAGGGAAAAACTTGTTCATATTGTGGCAGAGGTTTTACGTGCACTGGTGATTTAACACGTCACATCCGTACACATACCGGGGATAAACCCTTCAAATGTACATATCCCGGGTGTCATTTTGCATTTATATCGTCTGGTGATTTGTATAAGCACGCTAGACGTCatacaaaagataaaaatccAATACCACGTCCTCATGTATgtgaaatatgtaaaaaagatTTTGATCGTCCGTACGATCTAAAACGACACACTGCCCGTCATAAATTAGATGATCCCACATATGAGGCATACAAATGTAATGtctgtaataaaaagtttagtcGTAAAGATCAATTTAAAGCCCATGAATTCCGTCATTTAGGTTATAAACCCCATAAATGTAGTTACTGTACAAAGGCATTTACCGATGCCAGTAATTTTgcaaaacacataaaacaacataaaatggGTGCTATAAAATCTGACTTATTAATatgtaattattgtaataaaacatttaaaaataaaatatcaatagCTAAGCACATAATTGCCTGTtcaaaaaagaatattataataaataatggacAGTCAATGGGGATATCGACAGGGACGCCGACACCAACAATAACTAGtgaatgtaatttaaaaattgaaaaataa
Protein Sequence
MDTKVLTMMKHEPDDYYHQKSASNYKNYNIQQQQQPIFNNNNNDDDDDDPFGEITIQFDDEVQTLYVGPVEISRTSLDGEKEQHEQQQTNKDKQTTITSDMIKNNFDGKFTLSDEITIIPCSSNVIPVNHTICKQATVNEQPTTKKVHHQMKITTKKSPIDKTIIKKQINANNDKEIIFKKETDLSNGSDSGIDDIIEPKIIKTNNDNQKIPLNEKENIPDKYKQTIQISSPVKKLKIKTDEILDKTELKICNICNASFSRLTSLNSHKQQYHSNNNNNTNLLNINKSTGNNNIINEENNDNDNDKHSIKCTHCKMKFKRDIWYKRHLINHHGIVINNSNDKKLNNGKQNGLIKINNNNNNINNNEVIEATGKQTKQTKANEKLLNTANALLPAIAPTSVTTTMTTTTTTIITKNTPAPVDASSTTIIPKDSVTPSTSSSKSLKFRISVKKDTNNKISKYFEKIGNDKNTELDNNVADKDNDDDEDEKSTQIYDNDLTKIKIDNNLDTDNDNNINEDINKENNDITESNGITLITTTDTLAPVEIINNVYTVEFLNDKETMNTSDNNCDNVDINIETMDTLNNVEMGNYENDNNVNGDDELETETDIHETEPVLEVNRLDVGNRKQKVEISDEIEEEEKLLNDIELPISEEASTPSTVLVADDLEPLISRETSVCSDETNQTLLKDDGNDEISTDGKKYVCKICGASFSKRYSLGPHIMRVHTKEKGKTCSYCGRGFTCTGDLTRHIRTHTGDKPFKCTYPGCHFAFISSGDLYKHARRHTKDKNPIPRPHVCEICKKDFDRPYDLKRHTARHKLDDPTYEAYKCNVCNKKFSRKDQFKAHEFRHLGYKPHKCSYCTKAFTDASNFAKHIKQHKMGAIKSDLLICNYCNKTFKNKISIAKHIIACSKKNIIINNGQSMGISTGTPTPTITSECNLKIEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-