Palb009866.1
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- -
- Assembly
- GCA_961205885.1
- Location
- OY540804.1:28262051-28266043[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.11 5.9 7.2 1.4 3 23 217 238 215 238 0.96 2 16 0.36 20 5.6 0.5 6 23 247 264 247 264 0.97 3 16 0.00011 0.0058 16.7 1.0 1 23 270 292 270 292 0.97 4 16 9.9e-05 0.0055 16.8 4.5 1 23 300 323 300 324 0.94 5 16 0.0023 0.13 12.5 2.5 1 23 333 356 333 356 0.95 6 16 0.016 0.87 9.9 0.6 1 23 362 385 362 385 0.94 7 16 0.085 4.7 7.6 3.0 2 23 394 415 393 416 0.94 8 16 0.0004 0.022 14.9 0.3 1 21 423 443 423 444 0.93 9 16 0.35 20 5.6 0.2 2 23 653 675 652 675 0.87 10 16 0.00027 0.015 15.4 1.3 1 23 708 730 708 730 0.98 11 16 4.2e-05 0.0023 18.0 2.2 1 23 738 760 738 760 0.99 12 16 2.2e-05 0.0012 18.8 0.3 1 23 769 792 769 792 0.98 13 16 0.48 27 5.2 1.6 1 23 798 821 798 821 0.93 14 16 0.00029 0.016 15.3 1.0 1 23 859 882 859 882 0.96 15 16 3.8e-06 0.00021 21.2 2.7 1 23 888 910 888 910 0.98 16 16 0.006 0.33 11.2 3.3 1 23 916 939 916 939 0.97
Sequence Information
- Coding Sequence
- atgttaaataattgtcGCTTATGTTTAAGCGATTCAAAAGATTTTCTTGATATATTCAGTGATGATGgcattcataaaaatattaaaacaataatcaagcaacatttttactttgttgATGAGataaatgaaaatgatttattatcacaaaaatTATGCACGTCCTGTTGGTTAAGAATTGAAAGttttcatgatttttatttaagtgttAAAACAATACATGATGCAtttacattaacaaaaaatgcaCCGAATAAAAGTGCTGATGAATTTTTACAAGCGATTAAAATTGAAGAGGAACAACAATATGAaccaattgttaattttttacaagTAGAAATtgagaaaaaggaaaattttgaTATAGAAACAAGAAgtaatattgataatattgTCCCAGAACTAGTCCAATTAAATGAAAGTGATGGTACTAATGATAtatttagtgatggaaataatgatgataatacaTCGTCATCTAGTGAACTAGATGATGAATTAccattatcaaaaataatatataatgataatgatgagaATAGTGACTATGAACtggataataatataaatataattagtaatattaataataatgtaaaggTAGAGAATGCTGATGATATACAAGTTAGGGAATATTGCATAATGAATTGTCAAATGTGTACGGAAACATTTCAAACATTTCTCGATGCAAAACGTCATTACAGGAAAGTACATCAAACACCCGGCTATTTAGTTTGttgtaaaaagaaattctttcgTCGTGGAACAGTTAAGGAGCATATACTATGGCATACAAATCCGGAATTATTTAcTTGTAaggaatgtaataaaatttatgcagATAAATATGGATTAGATACTCACATGTATTATCATTTACCAAGTGAACATCGGCCACATAAATGTGAAACGTGCGGTAAAACATTTGCGAAAACTTATCAGTTGAAACAGCATATTGATTTAAGGCATCATCAGCATCAATTTATggcaatgaaatttaattgtgaTGAATGTGGTAAAGGTTTTACTTCGAAGGGTAAATGTAATACCCATTTCCGTATTGTCCATGATAAACAGAATTCTTATGTTTGTGATATCTGTGCACGGGTATTTAAAAGTAGAATTGTTTTCGATCGGCATCATAACGAAATACATTTAGGTATAAAACCACAGAAGATACAATGTCAAGTGTGTGGCGCCTGGTTAAAACATGAGCATGCTCTACGTTCACATATAAGGCGTCATCATGAGAATAATGATGTGGAGCACATATGTAACATTTGTGGTAAAAAATCACCAAATAAGGACGCATTAAAAAGTCATACAAATGATGTTGGggtagagaaaaatatttgtgataTAATAAAGCATCATTTTTGGTTTGTTACCGAGgttaatgaaaataatttattatcaaagacGATATGTTCATCTTGTTGGATTAAAACTGaagattttcataatttttatttaaaagttaaattaaaacaagatgAACATGTGCAACATCAAAAttcaattgtttatattaaggAAGAGGAAAGGACTGAGGAACATTCACaggcaaataataaatttttaatatatgaaATCGATAAGGATGAAACATCTAAAACtccaaaaattaaatgtgaagtagaattaaatacagaaaatatcgATTATAATGCACATGATTATGATGTACCTGATTATGATGCACCAGACTATGATCCAAGTGACAGTAATGCCCATAGTGTTGATTGTGATATCGATATTGATACAGAAGTACCATTTTCCAAACATCTAGAGGATGATAcggttaataatataaataatgacgtTGAAATACCACAAAAGGAAACGAAAGAgggtgaaaaaaataaatgcagtAAAGTATCCAAAGAGaataagaagaaagaaaaacttccTGAAATTGATAATTTAGATGAACAGATAACTCAGTATTTTAAAATGTCTTGTGATCTGTGTCCAACcgaatttaaaacatttatggaTGCAAAAACTCATTATGCCGATGCCCATCAAATATCAAAAGGATATCTATCgtgttgtaaacaaaaattaaaaaatctaacCGCAATTAAGGAGCACATCTATTGGCATACAAATCCAGAAAAATTTACatGCAAGAtatgtaatataatttttgctgTTGATCGAGGCTTGAAACGTCATATGTGTAGTCATGAGCCGGAAGAAAATCGACCATATAAATGTGATTCGTGTAGTAAATCGTttgcaaaattatatttattaaaaattcatacaaaaaCGCACACGAATGCATTAAtggataaaaagtttaaatgtgATACATGTGGCAAGGGatATCCAGTGGAGTCTCAATTACGATCTCATAAACGTGTTGTACATgaacataattataatcatttttgtgATATTTGTGCCCGTTTTTTCCAAGGTAAAAAAGTATTAGACCGTCatataaatgaatttcatttaggtattaaaatgcaaaagaTTCAATGTAAAATATGCGATGCATGGATACAAACGAATTCCATGCGTGGACATATGGAACGACACAAGGACGATGATGAGTCAAAAGAATACGCTTGTAAAATTTGTGGCAAGAAGATTGTTAGCAAACACGGTTTAAAATCTCACGAAAGATACGTACATACAATGGAACCCCGTTACAAGTGTAACGTTTGTGATAAAatgtttaagataaaaaatcaTCTAAAGGATCATATGGCATCACATACTGGTGAAAGTCGTTACACCTGTTTATTTTGTccaaaaacatttcattcaAATGGTAACAAATCAAAGCatgttaacaaaatacatcctGAAGAATGGAGaaactataaaatacaaaatttaaaaatgcaaaatattcCGGAAAATGTATCATAG
- Protein Sequence
- MLNNCRLCLSDSKDFLDIFSDDGIHKNIKTIIKQHFYFVDEINENDLLSQKLCTSCWLRIESFHDFYLSVKTIHDAFTLTKNAPNKSADEFLQAIKIEEEQQYEPIVNFLQVEIEKKENFDIETRSNIDNIVPELVQLNESDGTNDIFSDGNNDDNTSSSSELDDELPLSKIIYNDNDENSDYELDNNINIISNINNNVKVENADDIQVREYCIMNCQMCTETFQTFLDAKRHYRKVHQTPGYLVCCKKKFFRRGTVKEHILWHTNPELFTCKECNKIYADKYGLDTHMYYHLPSEHRPHKCETCGKTFAKTYQLKQHIDLRHHQHQFMAMKFNCDECGKGFTSKGKCNTHFRIVHDKQNSYVCDICARVFKSRIVFDRHHNEIHLGIKPQKIQCQVCGAWLKHEHALRSHIRRHHENNDVEHICNICGKKSPNKDALKSHTNDVGVEKNICDIIKHHFWFVTEVNENNLLSKTICSSCWIKTEDFHNFYLKVKLKQDEHVQHQNSIVYIKEEERTEEHSQANNKFLIYEIDKDETSKTPKIKCEVELNTENIDYNAHDYDVPDYDAPDYDPSDSNAHSVDCDIDIDTEVPFSKHLEDDTVNNINNDVEIPQKETKEGEKNKCSKVSKENKKKEKLPEIDNLDEQITQYFKMSCDLCPTEFKTFMDAKTHYADAHQISKGYLSCCKQKLKNLTAIKEHIYWHTNPEKFTCKICNIIFAVDRGLKRHMCSHEPEENRPYKCDSCSKSFAKLYLLKIHTKTHTNALMDKKFKCDTCGKGYPVESQLRSHKRVVHEHNYNHFCDICARFFQGKKVLDRHINEFHLGIKMQKIQCKICDAWIQTNSMRGHMERHKDDDESKEYACKICGKKIVSKHGLKSHERYVHTMEPRYKCNVCDKMFKIKNHLKDHMASHTGESRYTCLFCPKTFHSNGNKSKHVNKIHPEEWRNYKIQNLKMQNIPENVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -