Palb008511.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ptychoptera albimana
Gene Symbol
pita
Assembly
GCA_961205885.1
Location
OY540804.1:10031736-10035117[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00014 0.0078 16.3 0.2 1 23 218 240 218 240 0.97
2 10 5.9e-05 0.0033 17.5 0.9 1 23 246 268 246 268 0.96
3 10 1.7e-05 0.00095 19.2 2.9 1 23 274 296 274 296 0.98
4 10 0.28 16 5.9 0.5 1 23 302 324 302 324 0.94
5 10 0.00013 0.0072 16.4 0.6 1 23 330 352 330 352 0.95
6 10 2.7e-06 0.00015 21.7 0.1 1 23 358 380 358 380 0.96
7 10 0.0004 0.022 14.9 4.4 1 23 386 408 386 408 0.98
8 10 4.3e-05 0.0024 17.9 0.1 1 23 415 437 415 437 0.96
9 10 0.00073 0.041 14.0 0.2 2 23 443 464 442 464 0.97
10 10 0.025 1.4 9.2 0.7 1 19 470 488 470 493 0.92

Sequence Information

Coding Sequence
ATGGCAGAAGTAGAGGAgcgaaataatgaattaaagtcGAAACTAATATGCCGATGCTGTATGAATCAGGATGTGTCTTTAACAAACATATATTCCCGTGAAAATAGATTGAAGAGCACCGTACCATTGCCGCTTCAGATAATGGCTTGTGTATCAATTGAGGTTTTTACTAACGACGGCATGCCGAGCACTATTTGCGATTCGTGTCGCATGCTGATGGACCATTCATACAGATTTAAGCAGATGTGTAAAAAAGCTGATACCATGCTTAAGCAATATCCATTAACTGGAAGTTGGCCTAAGGCTCTAGAATTGCCAAGAATACCTATGGAACtaataaagAAGCaacagaaacaaaatacaagcGAACAATCAACTCCAATGTTAAAACGCCCTGCGTCAAGCCCAGCTGTTGCATCACCGCAAATGAAACGGCTTCGAGAGGGAACGTCacctaaaattttaaataaaaattcaccaaaGCTGTTGAATAAAAACGTTAGAGCATCTCCAGCTCCAGTAATGAGTGTTccaataattaaaacagatgATTCTGGTAATGTGGAAATTATCACTGAATTGTTGGAAAATGTTGAAAGTTATGAAGAGCCTGATCCCGTTAAATTTGCTCCACCTGTTGAAACAAATGTTTTCCCATGTCCACGATGTGATCGTTCATTTCCACTGCGACAATTATTGGAGATTCATATGACAAATCATTCAAGAGAACGAAGCTTCCCATGCAATATTTGTGACAAAAAGTTCTTTAGTAAATATGATTTGGGCAAGCATAGCTTGATTCACAGTGGTGAGAAACCGTATCAATGTGTTGTTTGtagtaaaacattttcaagATCCACTCTATTGCATCGTCACGAAAAAGTTCATACTGATCAACCACGGTATTTGTGCGTTTTTTGTGATCGTCCATTTTTATCTCGTACCGAACTTGATAAGCATAGTGAGAcccataaaaaaaatcgacCATTTTCATGCACCTTATGCAATAAAAGCTTTGCATTTAAACAAGGTTTGGAAAGACATGAAGTTGTACATTTGAAGGAACAACCATATCCTTGCGAATATTGCGATCAGAGTTTCCCAACACCTAGTAAATTAGCAAGGCATCTGACAGCACATGCCGGCGAAAGACCGTACCCATGTAAGTTGTGtccaaaatcatttttattaagtcaTCATTTGACTCGGCATCTTCGTTCTCATGCAGCTGGCGCTGGCTCATATAAATGCAGTGATTGCGAAATTGTCTTTAGTAGTAAAGATGATTTGATATATCATTCAGCTGTTCATGCAACACAAAATTTGACATGTCCGCTATGCAAAGAACAATTTAACGACTTGGATTCTGTTACAGAACATATTAAGTCACATTCTGTTGGCGAACAATATGCTTGTGATTATTGCGATTTGATATTCAGCAATGCTGAGAAGCTAGATGAGCATTGCTCTGCAAATCACATTGAAGATGGGTATGTTGAAGATGAGAATCAAAGTCAccatgttattattaaaaaagaaatgaaggaTATGGATAGTGACTCTGAAGAGGATGATGATGAAAGACGAGAAAACGATGAAGAGGAGCAGCATATGGAGAATAACGACGAGGAAACAGACGGCGAAGGAGAAGAAAACAACGAGCAAGTCGATGAATATGTTGTAGAAGAAGTTGAAGAAGAGGGGACTGATggtggcgaaaaaaaaattagcttaAAAACACTTCAAGTAATGAAGAGTCGTCCAATGAATGCTGCAAAACAGTATGGATCAAAGAGAAGTGTGTCGCCACCCAAAGCAAAATCACAGCAAAATGACAATTCAAGTAAACAAagcttaattacaaaatataccAAAAAGGTTGTTAGCACTCCGCCATCACACAATTCTTCATTGGAACAAGGTGCATCGTCGGTAGAGTCTCTAAAGCGTCCCcttcgtaataataaaataaaagattatgcAAAATTGGTTAAAAATGACTTAAAGTATCAGGACGAAAACGACGATGAGGATATGGAAGAGGAACAAGAAGAAGAGCCTACAGCGTCAGATGAAGATGAAGATTATGTTGCAGAAGAGGAAGATGATGAAGAAACGACCAAGAAATCAAATTCCCGTGTTTACAAATCAAGACAACCGCAACGTTATTCCAATGAAAAAGTATCGCAGAAGGAGAAAACAAATTCGCCAGTTACACGTCGCTCTGGTAATGAAAATCGGACGTCTGACCAGACAAAAGAAAAGCTATCGATCCAGGATAAAGTAagtcaatttataaaaattaatgacaacaatacaaataaagtAGCATCGGCAACTACTAAGgtggtaaaaaaagaaaatactgcATCGGTTGAAAAAGTTTtgaaaaatttaccaaaaggAGTAACAGTGTCAAAGAAAGAATCACCACAAGTTAAAACGACTCCATCAAGTACAGAGAACGTGTCATCTCCATCAAATGCTGTAAGGAAAGTTGCCAGCCCCGTATCAAATAACGACACAAAAGGATCGAATCAAACtcaaaaaatagttaaaaaagaaTCTGTGTCACCAAGCATCCAGAAAAAAATCCCATCTACTCAACctatgattaaaaaaccaaacaatgcCCCTTTAATGAACACTAAAACttattcaatgaaaaaaaccGTATCGAAGCCAGATACTCCAGAAGTAGTTAAAAAATCGAATAGTGATGAAAAAACGAAATCACCAAGCAAAAGTGTTACAGTGACACAAAAAGTAATTCTCACAAAAGCAGAAGTGGAGAAAATGACTAAAGAGGGTAAAATCACAATTCAGGAAGATGGTACAATGATACTATTGACAACGCATGGAAAAAAATCCACAACAGCTAGTGGAGGTGATTCCTCGACAAAGTCTTCAAGTGGagacaagaataaaaaagaaaattag
Protein Sequence
MAEVEERNNELKSKLICRCCMNQDVSLTNIYSRENRLKSTVPLPLQIMACVSIEVFTNDGMPSTICDSCRMLMDHSYRFKQMCKKADTMLKQYPLTGSWPKALELPRIPMELIKKQQKQNTSEQSTPMLKRPASSPAVASPQMKRLREGTSPKILNKNSPKLLNKNVRASPAPVMSVPIIKTDDSGNVEIITELLENVESYEEPDPVKFAPPVETNVFPCPRCDRSFPLRQLLEIHMTNHSRERSFPCNICDKKFFSKYDLGKHSLIHSGEKPYQCVVCSKTFSRSTLLHRHEKVHTDQPRYLCVFCDRPFLSRTELDKHSETHKKNRPFSCTLCNKSFAFKQGLERHEVVHLKEQPYPCEYCDQSFPTPSKLARHLTAHAGERPYPCKLCPKSFLLSHHLTRHLRSHAAGAGSYKCSDCEIVFSSKDDLIYHSAVHATQNLTCPLCKEQFNDLDSVTEHIKSHSVGEQYACDYCDLIFSNAEKLDEHCSANHIEDGYVEDENQSHHVIIKKEMKDMDSDSEEDDDERRENDEEEQHMENNDEETDGEGEENNEQVDEYVVEEVEEEGTDGGEKKISLKTLQVMKSRPMNAAKQYGSKRSVSPPKAKSQQNDNSSKQSLITKYTKKVVSTPPSHNSSLEQGASSVESLKRPLRNNKIKDYAKLVKNDLKYQDENDDEDMEEEQEEEPTASDEDEDYVAEEEDDEETTKKSNSRVYKSRQPQRYSNEKVSQKEKTNSPVTRRSGNENRTSDQTKEKLSIQDKVSQFIKINDNNTNKVASATTKVVKKENTASVEKVLKNLPKGVTVSKKESPQVKTTPSSTENVSSPSNAVRKVASPVSNNDTKGSNQTQKIVKKESVSPSIQKKIPSTQPMIKKPNNAPLMNTKTYSMKKTVSKPDTPEVVKKSNSDEKTKSPSKSVTVTQKVILTKAEVEKMTKEGKITIQEDGTMILLTTHGKKSTTASGGDSSTKSSSGDKNKKEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01277156;
90% Identity
-
80% Identity
-