Palb001468.1
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- -
- Assembly
- GCA_961205885.1
- Location
- OY540801.1:14807276-14810885[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.5 3.6e+02 1.6 2.6 1 19 44 62 44 68 0.76 2 17 0.00033 0.018 15.1 2.1 1 23 83 105 83 105 0.95 3 17 0.1 5.8 7.3 0.4 1 20 111 130 111 134 0.81 4 17 0.0023 0.13 12.5 0.1 1 23 137 160 137 160 0.95 5 17 0.00091 0.05 13.8 0.2 2 20 169 187 168 189 0.93 6 17 0.00023 0.013 15.6 0.8 1 23 197 219 197 219 0.98 7 17 0.012 0.64 10.3 2.1 3 23 227 247 225 247 0.96 8 17 0.00062 0.034 14.3 0.7 1 23 253 275 253 275 0.94 9 17 0.88 49 4.3 0.4 1 21 281 301 281 302 0.94 10 17 4.4e-05 0.0024 17.9 2.7 1 23 647 670 647 670 0.97 11 17 0.0018 0.098 12.8 0.3 1 23 733 755 733 755 0.95 12 17 4.9e-07 2.7e-05 24.0 0.2 2 23 791 813 790 813 0.96 13 17 4.6e-05 0.0025 17.8 0.1 1 21 832 852 832 853 0.93 14 17 3.7e-05 0.0021 18.1 2.3 1 23 861 883 861 883 0.98 15 17 5.6e-05 0.0031 17.6 2.4 3 23 891 911 889 911 0.96 16 17 2.6e-05 0.0015 18.6 1.5 1 23 917 939 917 939 0.97 17 17 0.016 0.9 9.8 2.2 1 23 945 967 945 967 0.97
Sequence Information
- Coding Sequence
- atgtcaaTAAAAACAGATGAATCCGGTAGTGATTATGATGATAATACTGATGATAGtgattataatgataaaaattcaataaaatcacaaacaaGTTGTAGTAATGGTACTGGAATAAGAAATCCCagatttaattgtaaattttgtggtaaaaaattgCCAACTGATATTAAGCGTAAGAATCATGAGGATACTTGTGAACATAAGAGAACCGCTGCGACAGTATTACAAGAaggtgaaattaaatttttgtgccAGgtttGTAAACAaacgtttaaatatttaactggACTCACAAGACATGAACGAAGGCACGAACCACCGGGAGgatttatatgtaaaatatGTGGGGAACATTTTATTACTGATGTACAACGAGTGCAACACAAAGATGATGTGCATAAGatTTATAAATGTCAATTATGTGAGGAGACGTTTAGCAAAGATGCTGACTACATAGAGCACATTCAAGCGGTTCATGATGGTAAAAAAAGAGATTATGTTGTTTGTGCGGATTGTGGCCAACAGTTTCGTTCTGCTGTTCagcttaaGCATCACACCTTTTCAAAATGTGGAACTGAAAAGTCATACACATGTGAACAATGTGGCTCAAAATTTATGACACAAAATACGTTAAATGCACACAAAATGATCCACATAGgagagaaaaaacatttatgtaatttttgtgGTAATAGTTTTTTAAGTAAAGGACAATTAAAAGTGCATGAACGTAGTCATACTGGtgaaaaaccttttaaatgtgatatttgtttaaaatcatttgcttATCGTGAAAGTTTAGTAACGCATTCATCTCTTCATACTGGTATTAAACCATATATTTGTGAGTCTTGTGGaagtcaattttcttgcatcggtaatttaataaagcataGAAAAGCAAGACCAGAATCTTGTGGTTTACCACaatttagtaaaaatacaaaaatagcaCCACGAGCAAgtgcaaaaaatcCAGGCAGTTTAACTATGAAATGCCAAAAAACAATACCAAAAATTACTCGCGGAccatataaaaagaaaaaattagataatctatctatagaaaataatgcagtagtgaaaaaagaagaaattgctATAAATGAATTGAGTAATCATAATGAAAgtgatacaaataattatataattaattattccgaTTTAAAAGGATATTCaacaattacattaaataaaaacgaagataCATATCATATAATTTATCCAGATGGTAATACAATAGCAACAACAGATTTAGAAGCAACAACATCAAATGAACTAATAACAATCCCTTCAGATACAATAGctgaagaagaaataataaataatgaaaaaacaataataattacaaatcataattatacagataattataatataaatgataattatacAACAACTGCAACGATTATAAATGgtacagaaaataattataatttttgtaataaatggaTTAATAATGATGTCGAtgatacaaatattatttacaataatataaCGTACGATAATACTTGCTatgaaaataatgatgaaagTTTTAGTCAGGAAAATACTATAGAAATAATTGAAGTTAAAAATGAAGATAAAGATGagtcgGGCATAGCTGAATATTTGAATGCAAAAGTAGTTGAAGAAATTATTGACGATAATATACCGTTGTcaactttaaaagaaaatttgagtgataaaacgaaaacgatcaggacaaaaaaatctaaatcatCAACACCTATCGCCACCACTCCAGAAGCAAACCATTATGAGGAAACTGTTTTAACTGattatgataatgataatgatgataagtATTCTGGTGGAAGTGCACATAATTCAGATAATGATTCAAATGCTagcaataatgataataatgaagaatatgaatttattgattatttagatGAAAAGGAAATtatttcgccaaaaaatgataaatcgtTTGAATGCAAAATGTGTTCCaaaaaatacacaacaaaaaattatttagataagCATATAAGAAATGAGCATTCAATAGACGATgcgaatgatgatgatgatgttgatgtaGATGTCAATGAAAATAGCCAtcatgacgatgatgatgataatgatgaagaagaagaagaagaagacgacgacgataaaaatgataaaataatgcagaataaaagtaaatctaataaaaataaaaagccgaGTAAAAGTAAAGGACATTACATATGCagtatatgtaataaaaagtatattaatcttaatttattgGATAAACATGAATTATTACATGGTCCCGATGGtgatttaatacataaatgttcgtgttgtaaattattttttaaaacacaaaaagaatGTGAAAAACATCAATTAAAGCTTCATGaaagcaaattaaaatgtgaggaatgcaataaaatgtttCGAGAACCAGATAATCTACAAGCGCACATACGTTATGCACATAAATCTGAACAAACAACACCCACTTCAGCAACAccaccaataaaaaaatattcatttatgtGTCCAGTATGTGGTAAAAACTTTTCATCAAAAGTATCATTGTCCGATCATGAGCAATCTGATTGTGGTAAATCGCCAATATATAAATGTGATACGTGTGACAAATCATATCATAGTGCTGGCTCATTAAAAACACATCAAACAATCCATTCAGGTGTTTTGCCACACTTATGTAAATTTTGTGGGAAAGCCTTTCGAACACAAGGCCAAGTTAAAGTACACGAACGTAGGCATAATGGTGATAAACCATTTAAATGTGAATATTGTTCCAAAACGTTTGCGTATCGTGAAAGTTTATTAACGCATCTGTCATTGCATACGGGTTTAAAACGTTTTATGTGTCAAGCGTGTGGCAATCGATTTTCCTGTATATCAAATTTGCAAGCACATCGCCGTTCCCATAAGACAACATGTGGACGGTTACAACTAATGACAAAAGCAGTTGGTCCGATGGGTGTGAatgattaa
- Protein Sequence
- MSIKTDESGSDYDDNTDDSDYNDKNSIKSQTSCSNGTGIRNPRFNCKFCGKKLPTDIKRKNHEDTCEHKRTAATVLQEGEIKFLCQVCKQTFKYLTGLTRHERRHEPPGGFICKICGEHFITDVQRVQHKDDVHKIYKCQLCEETFSKDADYIEHIQAVHDGKKRDYVVCADCGQQFRSAVQLKHHTFSKCGTEKSYTCEQCGSKFMTQNTLNAHKMIHIGEKKHLCNFCGNSFLSKGQLKVHERSHTGEKPFKCDICLKSFAYRESLVTHSSLHTGIKPYICESCGSQFSCIGNLIKHRKARPESCGLPQFSKNTKIAPRASAKNPGSLTMKCQKTIPKITRGPYKKKKLDNLSIENNAVVKKEEIAINELSNHNESDTNNYIINYSDLKGYSTITLNKNEDTYHIIYPDGNTIATTDLEATTSNELITIPSDTIAEEEIINNEKTIIITNHNYTDNYNINDNYTTTATIINGTENNYNFCNKWINNDVDDTNIIYNNITYDNTCYENNDESFSQENTIEIIEVKNEDKDESGIAEYLNAKVVEEIIDDNIPLSTLKENLSDKTKTIRTKKSKSSTPIATTPEANHYEETVLTDYDNDNDDKYSGGSAHNSDNDSNASNNDNNEEYEFIDYLDEKEIISPKNDKSFECKMCSKKYTTKNYLDKHIRNEHSIDDANDDDDVDVDVNENSHHDDDDDNDEEEEEEDDDDKNDKIMQNKSKSNKNKKPSKSKGHYICSICNKKYINLNLLDKHELLHGPDGDLIHKCSCCKLFFKTQKECEKHQLKLHESKLKCEECNKMFREPDNLQAHIRYAHKSEQTTPTSATPPIKKYSFMCPVCGKNFSSKVSLSDHEQSDCGKSPIYKCDTCDKSYHSAGSLKTHQTIHSGVLPHLCKFCGKAFRTQGQVKVHERRHNGDKPFKCEYCSKTFAYRESLLTHLSLHTGLKRFMCQACGNRFSCISNLQAHRRSHKTTCGRLQLMTKAVGPMGVND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -