Palb003598.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ptychoptera albimana
Gene Symbol
-
Assembly
GCA_961205885.1
Location
OY540802.1:18586517-18589922[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 9.9 5.5e+02 1.1 0.5 2 15 72 85 71 88 0.73
2 13 0.00053 0.029 14.5 0.4 1 23 368 390 368 390 0.95
3 13 0.00019 0.011 15.9 3.3 1 23 399 421 399 421 0.99
4 13 2.6e-05 0.0015 18.6 2.8 1 23 428 450 428 450 0.98
5 13 5.6e-06 0.00031 20.7 2.0 1 23 456 478 456 478 0.99
6 13 0.00093 0.051 13.7 1.1 1 23 485 507 485 507 0.98
7 13 1.2e-05 0.00069 19.6 0.4 1 23 513 535 513 535 0.97
8 13 0.00013 0.0074 16.4 0.5 1 23 541 563 541 563 0.98
9 13 1.5e-06 8.1e-05 22.5 0.6 1 23 569 592 569 592 0.97
10 13 5.8e-06 0.00032 20.7 1.5 1 23 598 621 598 621 0.97
11 13 2e-05 0.0011 19.0 3.2 1 23 627 649 627 649 0.99
12 13 0.00032 0.018 15.2 0.6 1 23 655 677 655 677 0.94
13 13 0.00069 0.038 14.1 0.1 1 22 683 704 683 707 0.92

Sequence Information

Coding Sequence
ATGACAGACGGCGTCCAAGCCGTTAAAAAcgtcaaaaacaaattacaaagCCCATTTTGTTATATATGCAATAGTAGAATTGGAGTATCGTCACGAAACGCATTACAATTATTCGGTGTAAAGgctCACCTTATCAACGGTACACCTATTGCTGTCACATTATCGTCATTGATTCATCGTGATATTGTTGAAGAAACTGCTCACTCACAAATTGTATGTAAGAAATGCAACAAGTTATGTGCGGAGTATGAAGAATTAGAGAATCGTTTAAGTGAAATTAGAACAGAAgttattcaaaattataataaaacaataattaagtaCGGTGGTAGGCCTGTAGATGTTGATACAGAAGAACTTTTAGCAACATTAGAAGCTAGTGAAGATAATTCAACAtttaatcaaagtAGGGAAgatatagaaatagaaaattcatcAGGTGAAAATTCCGAAGTTATAATGCCTGGACATATAATAATGCCGTCAAATGAAACAATGCTGaatgatggaaataaaaaaataattttaattcaaaataaaaaattaataaaaaatgaatttatcgaTGATAgtatgaagaataaaaatgaaaatatagaaTTTGATGATAGTCAAGAATCAATTGAAGATGAAGATGCACAGGAGCATCATTATTTTGAAGAAGTtgaaataataacagaaaatcatgaagaatataatttattaaataacgatgaaattaatataaacgatgaTCATCATAGTATTGATATTCTTGAGAATAATGATTCTATGGTTGATCAGCAAAATATGGAAATCAATATTATGAAAgaaTTGAGAATGGGTATTAAATTGGAACCGGATGAtatagaaattaatgaaaataaaagacaaaaaaatggaaaaagatCAAAATCAGAACCAAAAATTAAGCAAGAAGTACCTGAGGATggtgatgaagaagaagataaaGATCCAGAAATGGAAGAACAAGTGctttatATACGTGATGGTGAACAATTTATATGTCAGATTTGTCCTGATTCTCTGGAAGAAGAACAAATACAGTATGATACAAAAGGGATTGTGAGCCATTTGAAAAAGGAACATAATATAATAAGTCATGTATGCGATATATGTGGtgctaattttaaaaaacgtACGGAACTTAGTGAGCATTTAGAGGATCATTTACAGACAAATCAGAATGGAGAATTTCAATGTACCACATGCAATAGAATATTTAAGAATTTACGTTTATATCGTATACACAAGAGGATGCATTATTCAAATGTGAAAACATTTAGTTGTGATCAGTGTCATAAAAAATTCGGttcaaATAATTTACTAACGGAACATATGAATATGCATACTGGTTTTCGCCCATACAAATGTGATCATTGTGTAAAGGATTTCGCATCAAAATACACGTTATCAGCACATATGAAAATACATTCGGAGAGACCTCGTCCGTTTACATGTAAAGTGtgcaataaatcatttttaagtgGACAGAATTTGCAGCAACATGAAAAAATTCACACCGGAGTCAAAGGTTACATTTGTAATGTATGTGACAAAGCGTTTGGTACGCTGCACAATTTAACGGTGCATAAAATTGTACATTCAGGTTATAAACCATTTATTTGTCGGACGTGTAATAAAGCGTTTGCCCGACGAGCAGAAATTAAAGATCATGAACGTACCCATACTGGTGAACGTCCATTTGTATGTGATATTTGTAATGCTCGTTTTGctcaaaaatcaaatttacaaTCTCACAAAAGAGTGAcacatttaaatgataaacgcTATAAATGCGACGTATGTTCAAGATCATTTAAACGTAGGCGACTTTTGGAATATCATATTCGAGCAACACATACTGGTGAGAGGCCATATAAATGCCCTCAGTGTTCATCATCATTTGTTTATCCGGAACATTTTAAAAAGCATGTCCGGACTCATTCTGGTGACAAGCCATATTTGTGTGAAgtTTGTAACAAAGCATTTAATAGTCGAGACAATCGAAATGCACATCGTTTTGTGCATAGTGATAAAAAACCTTATGAATGTTTAGTGTGTGGCCAAGGGTTTATGAGGAAACCATTATTATACGCTCATATGCAGCAACAaggACATTTAAATGATACAATCGTTGTCAATCAACCAAGGATAACAGACGGTGAGCAAATTGTAACAACAGACTCTAAACGAGAATGGTTAAagcaaaaacatttatcaGAAGAGAATGTGGATGATGAGGGAAAAGAAATAATCGAGGAAATTGATTATGAAGAGGAGCGTATTGAGGAAGAACGTATTGAAGAAGAGGAAGAATTaggagaagaaaatttaattattgatggtCAAGTGCAATTTACTGATGAGCAAATAACTGATGACCTTAATGAATATACAAATGTATCGTCGGAACAAATATTTGTGTCCGGCGATGAACATTACATTGAAACAGAAAATGGTCCTGTGCAAATAGTACAAATACGTTTACCAAATGCAGACGGAAAAGATAATATGGCATGGGTTAATCTAGTATCTCAATAA
Protein Sequence
MTDGVQAVKNVKNKLQSPFCYICNSRIGVSSRNALQLFGVKAHLINGTPIAVTLSSLIHRDIVEETAHSQIVCKKCNKLCAEYEELENRLSEIRTEVIQNYNKTIIKYGGRPVDVDTEELLATLEASEDNSTFNQSREDIEIENSSGENSEVIMPGHIIMPSNETMLNDGNKKIILIQNKKLIKNEFIDDSMKNKNENIEFDDSQESIEDEDAQEHHYFEEVEIITENHEEYNLLNNDEININDDHHSIDILENNDSMVDQQNMEINIMKELRMGIKLEPDDIEINENKRQKNGKRSKSEPKIKQEVPEDGDEEEDKDPEMEEQVLYIRDGEQFICQICPDSLEEEQIQYDTKGIVSHLKKEHNIISHVCDICGANFKKRTELSEHLEDHLQTNQNGEFQCTTCNRIFKNLRLYRIHKRMHYSNVKTFSCDQCHKKFGSNNLLTEHMNMHTGFRPYKCDHCVKDFASKYTLSAHMKIHSERPRPFTCKVCNKSFLSGQNLQQHEKIHTGVKGYICNVCDKAFGTLHNLTVHKIVHSGYKPFICRTCNKAFARRAEIKDHERTHTGERPFVCDICNARFAQKSNLQSHKRVTHLNDKRYKCDVCSRSFKRRRLLEYHIRATHTGERPYKCPQCSSSFVYPEHFKKHVRTHSGDKPYLCEVCNKAFNSRDNRNAHRFVHSDKKPYECLVCGQGFMRKPLLYAHMQQQGHLNDTIVVNQPRITDGEQIVTTDSKREWLKQKHLSEENVDDEGKEIIEEIDYEEERIEEERIEEEEELGEENLIIDGQVQFTDEQITDDLNEYTNVSSEQIFVSGDEHYIETENGPVQIVQIRLPNADGKDNMAWVNLVSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-