Palb004781.1
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- hang
- Assembly
- GCA_961205885.1
- Location
- OY540802.1:33425187-33432203[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.00096 0.053 13.7 1.0 3 23 335 356 334 356 0.96 2 25 0.3 17 5.8 4.1 2 23 442 465 441 465 0.90 3 25 0.3 17 5.8 0.5 3 21 472 490 471 491 0.95 4 25 0.34 19 5.6 0.7 3 23 538 559 536 559 0.93 5 25 1.7 95 3.4 0.1 3 21 573 591 572 592 0.92 6 25 3.2 1.8e+02 2.6 0.6 2 23 600 622 599 622 0.92 7 25 0.00035 0.019 15.1 0.2 3 23 664 685 662 685 0.95 8 25 5.2e-05 0.0029 17.7 0.1 1 23 693 716 693 716 0.95 9 25 0.0036 0.2 11.9 2.3 1 23 726 748 726 748 0.97 10 25 0.0048 0.27 11.5 0.6 1 23 785 808 785 808 0.97 11 25 0.0099 0.55 10.5 0.0 2 23 865 886 865 886 0.98 12 25 0.022 1.2 9.4 2.1 2 23 946 968 945 968 0.95 13 25 0.0068 0.37 11.0 0.5 2 23 977 999 976 1000 0.94 14 25 3.5e-05 0.0019 18.2 1.5 1 23 1030 1053 1030 1053 0.97 15 25 0.00056 0.031 14.4 3.1 1 23 1099 1121 1099 1121 0.98 16 25 0.0025 0.14 12.3 2.2 1 23 1129 1152 1129 1152 0.96 17 25 0.0019 0.11 12.7 2.4 3 23 1161 1181 1159 1181 0.96 18 25 4.8e-05 0.0027 17.8 1.0 1 23 1213 1235 1213 1235 0.98 19 25 0.00091 0.051 13.7 0.0 1 23 1275 1297 1275 1297 0.93 20 25 0.00032 0.018 15.2 0.2 2 23 1335 1357 1335 1357 0.91 21 25 0.064 3.5 7.9 0.3 2 23 1382 1403 1382 1403 0.96 22 25 2.2e-06 0.00012 22.0 0.4 2 23 1416 1437 1415 1437 0.96 23 25 0.00072 0.04 14.1 0.7 1 23 1622 1644 1622 1644 0.96 24 25 3.8 2.1e+02 2.4 0.3 1 14 1667 1680 1667 1684 0.78 25 25 0.27 15 6.0 0.5 2 23 1696 1718 1695 1718 0.92
Sequence Information
- Coding Sequence
- atgaatgaagaaCCATCTGGTATAAAACGACATAAATATTGTCGTTTGTGTTTAGCACCGGATAATGAGTGTGTTCCAATTTTTACAACCACAGCTGCTGATAAGGaaccattaaaaataaaaatacatgcGTGTGTTAATATTCAGgTTCATGAAAAGGATAAATTATCATCCCGGATTTGTCATGGTTGTGTTAGCTATTTAAATTCATGGCAAAGTTTCAAAAATCGATGTTATGCATCACAGAGGAAGCAAAAACGTTTACTTGGGATTACGTCATCATCTGGTTAtgaacaaccacaacaacaacagcagcagttaCAAAAGCAACAACTATTACATActgaaaaatttcaaaattccattggaaaaaaacaacaaaatcatttaacagaagatacaaataataataataatacgaataaagaaaatactgctgatgatgatggtgatgttGAGGATGATGAAgacgacgacgatgatgatgatgatgatgaagaggaagaagaagatgGTGCATCATACATTGATAATATTAtgcaatcaaattattttaatagcaacaataacataaatattaatcgtGATGATAGTAATAAATCAAGAaaggaaacaaattttttaaatttaattgatttgaGTCGTGTTAAAAAGGAACCCGATGATGTTATTGAATTATCAGAAGAACATGATTATcatGTTCCGGTTAATGTTAAAATGGAAATAGATCCAAATGAATATTTAGCACACGGTGATGATGAGGATGAAGAAGATTATATGGAAAATGAGAGTCATTCGATTGCAGCACCAATTGTACAAATTGATGAGGGACCATCAATATTAACATCATTAGGATTAACACACATAAATCATGTAAATCCATTCAACTTTCTGCAAACTGAACATGAATATGCTGATGatttaaatgatgataatTCATTGTTGTATTCATCGATACAGGAACaaccacaaaaaaagaaacaagcaCAAATGCCAGCTAATTGTTCAATATGTAATATGAAATTTTCAAATCGTGCAAATGCACGACGTCATGAACGTAATATACATGGTGTTATATTAAATCCAATAAGTGtacaattaacaaataatcataCGACAAGTACaccaaaaatacaacaaaataataatcatcatcatcatcagcaacagcagcagcagcaacaccaACAGCAACGTGTTCATATTGATCAACCAGAAGTCTATGATTATGATAATccacaaaattataaagaacatTTAACAGAGACAAAgataacatttataaaacgTAATAAAGAGTTTATAATACAATATCAAACGTTAACATGTAATTGTTGTGATCGTACATATCCAAcctataaaatgtttatgtcACATATGAGAAAACGTTATCATTCCCTACCTAgaaatttatgctttaaatGTTTACAACAATTTGAAACCAAGGGTCAATTTATAGcccatttaaaaaagaaaaattgtattaatttgtataaaatatatttggcCGATGATACAATATCGAAGAGTAGCagtaatacaaatttatcatTAGCGGGTAATGATACGATTCGTAAGACAAAGGATATAATATCGAATAAGGTGTACGGTTGTAAATTATGTACAAATACGTTCCGTTTAAAAATGGAATTTCGTAATCATGTGTATATAGTGCATAGTGAGTTCCAAAGGAATAAAGATGCAAATAGTGGCGCCTGTGCGTTTTGTAATGAGGAATTTGCTGATCCAATATTGCGAAGACGCCATTACAATAATCTTGAATGTATTGTGTTTATTGTGTGTGAAACGTGTGAGGATCGTTTTGAGAATCATACACAGTATATAGATCATGTGTATTCAACACATTTAAAGCAACCAAATGCTCTCGGCAGTACTTCGAACGTAGATATAGCGAATATGAATGATTCTAGTTTTGATCAAGATTATTCGCATTCATCATCATTAACAAGTTTACGACATCCACAAAATTGTCCTGTGTGTGGCcgacaatataataattattataatgtgtTACGGCATATGGAAGTCAAACATCCGGATCAATTACCAGCAACATATCGTTGTGAAATTTGTGCGACTGGTTTTCCCAGGCAATCAGAATTACGGGATCATATGTTGGCGGTCCACGGTGAAATTGTTATAAGGAAAAAGAATTTCTGTTGTAAAGATTGTAATGCATCGTTTGATGCAAAGGAACATTTAATCGACCATGAGAAAATTCATGGTACAATTCACGAAAACGATGATGAAAATTCGTCGCTCAGTGACATTAAAAAAGAGACAGGTGAACCTTTAGATGATGCAGTGAAgaataacttaaaaataaaattttatacatgTCATATATGCAAGAATTCGTATAACACAGAGAAAGGTCTTGATGAGCACATTCTAGTTGAACATGGCTTTGACAAAGAGATCGATTTGGGTAAAGAGTTTATAAAGGCTGATGTAACCATAGAGTTGAAACCGAAGCCATCGCATAATGAGCGAGTGCAAATTGCTGGCGaacaaaaagttaataataatttaaatgaaataaatgagcTGCAGATGCCAATTAAACAAAGAGAATGTCCCGTTTGCCAAGCTGTGTTTAATGTTGGCGTGGCCTACTCAAACCACATGAGaacacacacaaataataataatacaccaGCAATTCAATCAGGTGCAGCTGCCGCGGCTGCTGCGGcggcagcagtagcagcatcaTCCTCTTCTCATTTTCTAAATGAATCAGATAAAGGTGACGCTTTGATGCATCACCAATCACAATTGCCtgttataccaaaaaaaatcacacatcGTATACGATGCCGATTATGTCATAAACGGATCAATACTAAATTAGGTTTAAAACGTCATATGCTATATGCACATCAAGTCAAGAATGTCAAAGTGCTCAATTGCAATTTGTGTCCAGCGGAATTTAATACTGAAAAGGGATTAACGGTGCACATGTTCCGTGCCCATCATGTATCGATTAAAGAAGATGCAATAACCGAGGCAGGAATACCCATTGTACCAATACCAGTAGCACCAGTTGTTGTTAAATCGCAGCATTTCGAATGTGACATTTGTCATACGGTGTACAGAAGCAAGGATCAATTAAAAGTGCACAGCCAGACAGTGCATGGTTTTGAAAAtgTGGACGATGATGATACTGAAGTTGATACCAACTTAAATGCTGGACTAGAAATATCAAATGGTGATGATACGGAAATGCCACCAGACACATTAGAGATAATCCCAGTTACAAATGATATTTGGTTCCAGTGTCGTTATTGTAACGATACCTTTAATTCCCGTAAAAAGTTAACCATTCACATGAATTCCCATGATGAACACGATCAAACGGATTACTCGTGTAAAGATTGTGGAAATGTTTATGGAACAAGAAAGTCATTGTGGGTTCATCGTCATAAGAAACATCCACGGCCGCCTAATCCAATTTGTTGTGAGATTTGCAAGAAAATATTCTTTGATAAAATGGAATTATATTATCACTTGAAAACACATTCCCAGCAGACGCCAATTGTGCCTGGAATTAAACCGCCAGTTATTGTACCGACGCCAACAATAGTGCAGCATCAGCAATTCACTGCTGGTAAATATTCGTGTCACGTATGCGGACAAAATTTCCAAGATAAAGGTCCACTGAGCAAACATTTACGTATTCATGAGATGCAGAATAATATGTTTACCTCAACCCCATTATTTCCAACGGCTGATGCTAATTTCCCAGTGACTGCATCTGTGGATGAGGTATGGGAATACAATCAAACGATAAATGGAGACTATGCTTGTGATATGTGCCCGAAAACATTCCCATTGTTGAGTGCATTAAAAGTGCATCGGGGTTGGCATTTCCGCAGTCCAAATGGACGACATGTAGTTGATCCACAAAACACATGGCAACCAGATTCGATGCCTCCAAGCAAAGTACGCCGTGTTCGACACTCAATGGGTAATCCACCAGTTTGCCCATATTGTCGGTCAACATTTGCCAGCTCAAATAATTTGCGTCGCCACATTGTGGAAGTTCATCGGCGCAACGAGAACAAACTGATGCGTGACAATACGGCTGTGAATACGTCGGCATTTATCGAACGTGTACGGCAATGCCAGGCATGTCAAATGGTATTTAAAACGTCAACTGAATGGATCGATCATAAGATAATGCATGCGCGTACCCAAAAGCCATCTACCACTTTTGAATGGAATTGTGAGATTTGCGGCAAAATGTTTACAAGGAAGGAACGTCTATTGCAGCACATGATAACTCATTTAAATAGCAAGGAATTTGACGAGGATTTACCAATTACTGGAAGTCCAATGCAAAAGCAAAATCAGAACCAAGGACAgctaaaacagcaacaaatttTACAGCAGGAAGAAATGCATTTTGAGAGTAATTCCCAAAGTTCGGCAACAACATCATCAGAAAGTTCGAATTTAATACAACAACGTCAAGAGCAGGAACAACAGAAACAGCCACAAGCAGATGTGGAggacgacgatgatgatgacgatgacgacgaagatgatgatgatgaggaagATGAGGCAGAAGACATGGAAATAGAGCAAAATACACCTAAATTTGCACCAAATGAGGATACCCAGAATACAAACGATAATGAGGGGAacgatgatgacgatgaagCAATggatgaagatgatgatgtAGAAGATGATGACGACGATGATGACGAGGATGAAGACGAAGATGATGCAGATGCGgataaatcaaaacaaaataatgaaaacaactTCCACGAGGATGAAACAAGTAATACCAATGATTTCCAAACACAAGTAGCCGACTCATCCCGTGCCTATTCATGTGACCTgtgtaaagtttattttaaaaccgcCAAAGAGTTGCGACGTCATGTGTCTGCACATTTTCTGAACGGTCCCGTAACTATTGTATCTGAAGAGAACAACCAAAGGAACAGTCCTGGCAAACAGTACAAATGTCGTCACTGTGGAATACTGTACGACGATTATGACACGATGCAAACCTGCATTGACTCccataaaaatcaaacaaatctAAAATGCGGCGAGTGTCATCTATTTTTCGTAAATGAGCAACAGGTGTTGGATCACGAGAAATTAGTGCATCCAAAAGGTTtaaatagtaatagtaatagtattgctgtgtaa
- Protein Sequence
- MNEEPSGIKRHKYCRLCLAPDNECVPIFTTTAADKEPLKIKIHACVNIQVHEKDKLSSRICHGCVSYLNSWQSFKNRCYASQRKQKRLLGITSSSGYEQPQQQQQQLQKQQLLHTEKFQNSIGKKQQNHLTEDTNNNNNTNKENTADDDGDVEDDEDDDDDDDDDEEEEEDGASYIDNIMQSNYFNSNNNININRDDSNKSRKETNFLNLIDLSRVKKEPDDVIELSEEHDYHVPVNVKMEIDPNEYLAHGDDEDEEDYMENESHSIAAPIVQIDEGPSILTSLGLTHINHVNPFNFLQTEHEYADDLNDDNSLLYSSIQEQPQKKKQAQMPANCSICNMKFSNRANARRHERNIHGVILNPISVQLTNNHTTSTPKIQQNNNHHHHQQQQQQQHQQQRVHIDQPEVYDYDNPQNYKEHLTETKITFIKRNKEFIIQYQTLTCNCCDRTYPTYKMFMSHMRKRYHSLPRNLCFKCLQQFETKGQFIAHLKKKNCINLYKIYLADDTISKSSSNTNLSLAGNDTIRKTKDIISNKVYGCKLCTNTFRLKMEFRNHVYIVHSEFQRNKDANSGACAFCNEEFADPILRRRHYNNLECIVFIVCETCEDRFENHTQYIDHVYSTHLKQPNALGSTSNVDIANMNDSSFDQDYSHSSSLTSLRHPQNCPVCGRQYNNYYNVLRHMEVKHPDQLPATYRCEICATGFPRQSELRDHMLAVHGEIVIRKKNFCCKDCNASFDAKEHLIDHEKIHGTIHENDDENSSLSDIKKETGEPLDDAVKNNLKIKFYTCHICKNSYNTEKGLDEHILVEHGFDKEIDLGKEFIKADVTIELKPKPSHNERVQIAGEQKVNNNLNEINELQMPIKQRECPVCQAVFNVGVAYSNHMRTHTNNNNTPAIQSGAAAAAAAAAAVAASSSSHFLNESDKGDALMHHQSQLPVIPKKITHRIRCRLCHKRINTKLGLKRHMLYAHQVKNVKVLNCNLCPAEFNTEKGLTVHMFRAHHVSIKEDAITEAGIPIVPIPVAPVVVKSQHFECDICHTVYRSKDQLKVHSQTVHGFENVDDDDTEVDTNLNAGLEISNGDDTEMPPDTLEIIPVTNDIWFQCRYCNDTFNSRKKLTIHMNSHDEHDQTDYSCKDCGNVYGTRKSLWVHRHKKHPRPPNPICCEICKKIFFDKMELYYHLKTHSQQTPIVPGIKPPVIVPTPTIVQHQQFTAGKYSCHVCGQNFQDKGPLSKHLRIHEMQNNMFTSTPLFPTADANFPVTASVDEVWEYNQTINGDYACDMCPKTFPLLSALKVHRGWHFRSPNGRHVVDPQNTWQPDSMPPSKVRRVRHSMGNPPVCPYCRSTFASSNNLRRHIVEVHRRNENKLMRDNTAVNTSAFIERVRQCQACQMVFKTSTEWIDHKIMHARTQKPSTTFEWNCEICGKMFTRKERLLQHMITHLNSKEFDEDLPITGSPMQKQNQNQGQLKQQQILQQEEMHFESNSQSSATTSSESSNLIQQRQEQEQQKQPQADVEDDDDDDDDDEDDDDEEDEAEDMEIEQNTPKFAPNEDTQNTNDNEGNDDDDEAMDEDDDVEDDDDDDDEDEDEDDADADKSKQNNENNFHEDETSNTNDFQTQVADSSRAYSCDLCKVYFKTAKELRRHVSAHFLNGPVTIVSEENNQRNSPGKQYKCRHCGILYDDYDTMQTCIDSHKNQTNLKCGECHLFFVNEQQVLDHEKLVHPKGLNSNSNSIAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01277118;
- 90% Identity
- -
- 80% Identity
- -