Basic Information

Insect: Ptychoptera albimana
Gene Symbol: -
Assembly: GCA_961205885.1
Location: OY540802.1:10836296-10843674[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00011 0.0058 16.7 0.2 3 23 161 181 160 181 0.97

2 12 6e-07 3.3e-05 23.8 1.2 1 23 187 209 187 209 0.99

3 12 2e-05 0.0011 19.0 2.8 1 23 215 237 215 237 0.98

4 12 2.3e-05 0.0013 18.8 1.6 1 23 247 269 247 269 0.99

5 12 1.8e-06 0.0001 22.2 1.4 1 23 275 297 275 297 0.98

6 12 2.2e-06 0.00012 22.0 0.2 1 23 304 326 304 326 0.99

7 12 1.7e-05 0.00092 19.2 1.1 1 23 332 354 332 354 0.97

8 12 2.6e-05 0.0014 18.6 2.7 1 23 361 383 361 383 0.99

9 12 2e-06 0.00011 22.1 1.6 1 23 389 411 389 411 0.98

10 12 0.00039 0.022 14.9 0.3 1 20 417 436 417 439 0.93

11 12 1.1e-05 0.00061 19.8 1.1 2 23 446 467 445 467 0.97

12 12 2e-06 0.00011 22.1 1.4 1 23 473 496 473 496 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00011	0.0058	16.7	0.2	3	23	161	181	160	181	0.97
2	12	6e-07	3.3e-05	23.8	1.2	1	23	187	209	187	209	0.99
3	12	2e-05	0.0011	19.0	2.8	1	23	215	237	215	237	0.98
4	12	2.3e-05	0.0013	18.8	1.6	1	23	247	269	247	269	0.99
5	12	1.8e-06	0.0001	22.2	1.4	1	23	275	297	275	297	0.98
6	12	2.2e-06	0.00012	22.0	0.2	1	23	304	326	304	326	0.99
7	12	1.7e-05	0.00092	19.2	1.1	1	23	332	354	332	354	0.97
8	12	2.6e-05	0.0014	18.6	2.7	1	23	361	383	361	383	0.99
9	12	2e-06	0.00011	22.1	1.6	1	23	389	411	389	411	0.98
10	12	0.00039	0.022	14.9	0.3	1	20	417	436	417	439	0.93
11	12	1.1e-05	0.00061	19.8	1.1	2	23	446	467	445	467	0.97
12	12	2e-06	0.00011	22.1	1.4	1	23	473	496	473	496	0.97

Sequence Information

Coding Sequence: ATGTTtgaacaacaaattaaatcagaGCCAATGGGTTTTTATTCTGCGTGTCCTCCGCCACCTCCATCaatacagcaacagcaacatcaacaaccgcagcagcagcaacaacaacagcagcagcagcaacagcagcaacaacaatcacGTGGAGGCGGCGGTGGAGATAATAATGAACAATCTGTAATTAATGTACAAGAtgaaaaagttaataatatgCAGCCACAATCATTAATTGTGattTCACAAGCGCAAGGTATTAATGACTGGCGGACACGACTGCCAGACCCAGAACAAAATGATGAGGCACAGCCTCCAGGCACACCGATGTCAAATATTTCACAAGACGGTCCAAAACAGGAAATAAATCCAAATAATACTCATATGCCATTATCTAGTTTATCATCTCAAGGTAATGGTGGgcatcatcaccatcaccaccatcatcatcatcacgcTGCTCGCAGTAAACCACAAGCATGCAAAGTTTGTGGTAAAATGCTGTCATCGGCAAGTAGTTATTATGTACATATGAAATTACATTCAGGAACAAAACCATTTCAATGCACCGTATGCGATGCCGCTTTTTGTCGTAAACCATATCTTGAGGTACATATGCGAACGCATACTGGTGAACGACCATTTCAATGTGATTTGTGTATGAAACGTTTTAGTCAAAAATCATCATTAAACACACATAAAAGGATACACACAGgtTATTGGAGCATGCATAAACCGTTCCAGTGTACACAATGTAATGCCGCCTTTTGTCGGAAGCCATATTTAGACATCCATATGCGAATACACACTGGTGAACGTCCCTTTGAATGTGAAATCTGTTTAAAACGTTTTACACAGAAATCgacattaaatattcataaacgAATACACTCTGTACAGGATCGTCCATATCAGTGTGAACAGTGTCCGGCTGCATTCTCACGAAAACCTTATTTAGATATTCATATGCGTACACATACTGGTGAACGGCCATTCGAATGCGATGTCTGTTTAAAAAGATTTACACAGAAGTCGTCACTTAATATCCACAAAACAATACATACCgTCGGAAGTCGTCCATTTCAATGTGAACATTGTCCGGCAGCGTTTTGCAGGAAGCCATATCTAGATATACATCAGCGTACACATACAGGGGAGCGTCCCTTTCAATGTGATATCTGTTTAAAGCGTTTCTCACAGAGGTCGACACTAAATATACACAAACGTATACATACAGgtGAACGTCCTTATGCTTGtgatatttgtaataaaacgtTTGCGGTGAAGAGTTACGTTACAGCACATAGATGGTCTCATGTTAGTGAAAAGCCATTAAGTTGTGATCGTTGTTCAATGACATTTACAAGTAAATCACAATTTGCAATtcatataagaacacattcgGCTGGACAAAATTATGAATGTAATGTATGTGGTAGGACTTTTATAAGGGATAGTTATCTAATAAGACATCATAATCGTGTTCATCGTGAGAATCGTACAACAGCAAATAGTATTGCAACAATAAATAGTGTAGCAACTGGTGAAATTCAAACACCAGAACCTGGTGAAGTATTTGAATCAACAAATTCACAAGTTTGTGACCTTAggtatgTATCAGATATACAAATGAATCCGTCACCCGCGGTATCACAAATGTCGTCGCCAGGTTTAAGTGGTGATCGAAGTGTAGGTCCTGTAATggttaataataatccaaCAGGTATTCCATTGAATAATGGCATGGTGACGGCAAATGATAGACTGATGCAAGAACGAGCGTTACATTCAAGAGCACTGCAAGAAAGAGCGCTGCATGAACGTGTACTGCAGGAAAGAGCCTTGCATGAACGAGCAATACTCCAAGAACGTGTTCTGCAAGACAGAGCGTTACAGGAACGTGCAATACAAGAGCGTGCACTTCAAGAGCGAGCTGCCTTACAAGAACGCGCTTTACAAGAGCGTGCACTTCAAGATCGTGCAATGCAAGAACGCAATCTTCATCCACCTATTGTAATACCTGGACACGTATTAACGCATGATAGGATAGACAAACTAGTTTTACCCGGTTCATTAGCTAGTCCTGGACCTGTTTGA
Protein Sequence: MFEQQIKSEPMGFYSACPPPPPSIQQQQHQQPQQQQQQQQQQQQQQQQSRGGGGGDNNEQSVINVQDEKVNNMQPQSLIVISQAQGINDWRTRLPDPEQNDEAQPPGTPMSNISQDGPKQEINPNNTHMPLSSLSSQGNGGHHHHHHHHHHHAARSKPQACKVCGKMLSSASSYYVHMKLHSGTKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCMKRFSQKSSLNTHKRIHTGYWSMHKPFQCTQCNAAFCRKPYLDIHMRIHTGERPFECEICLKRFTQKSTLNIHKRIHSVQDRPYQCEQCPAAFSRKPYLDIHMRTHTGERPFECDVCLKRFTQKSSLNIHKTIHTVGSRPFQCEHCPAAFCRKPYLDIHQRTHTGERPFQCDICLKRFSQRSTLNIHKRIHTGERPYACDICNKTFAVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKSQFAIHIRTHSAGQNYECNVCGRTFIRDSYLIRHHNRVHRENRTTANSIATINSVATGEIQTPEPGEVFESTNSQVCDLRYVSDIQMNPSPAVSQMSSPGLSGDRSVGPVMVNNNPTGIPLNNGMVTANDRLMQERALHSRALQERALHERVLQERALHERAILQERVLQDRALQERAIQERALQERAALQERALQERALQDRAMQERNLHPPIVIPGHVLTHDRIDKLVLPGSLASPGPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01277110;
90% Identity: -
80% Identity: -