Palb009823.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ptychoptera albimana
Gene Symbol
-
Assembly
GCA_961205885.1
Location
OY540804.1:27932587-27935136[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00086 0.047 13.8 0.4 1 23 78 100 78 100 0.99
2 18 0.0018 0.099 12.8 0.4 1 23 106 129 106 129 0.98
3 18 0.0016 0.09 13.0 1.7 1 23 135 157 135 157 0.95
4 18 2e-07 1.1e-05 25.2 0.2 1 23 163 185 163 185 0.97
5 18 1.1e-06 5.9e-05 23.0 0.9 3 23 193 213 191 213 0.98
6 18 7.3e-06 0.0004 20.4 1.4 1 23 219 242 219 242 0.97
7 18 0.72 40 4.6 1.5 1 23 302 325 302 325 0.91
8 18 0.032 1.8 8.9 1.5 1 23 362 385 362 385 0.95
9 18 2.2e-05 0.0012 18.9 0.3 1 23 391 413 391 413 0.98
10 18 0.0023 0.13 12.5 4.4 1 23 418 440 418 440 0.97
11 18 0.00018 0.0098 16.0 0.2 1 23 446 468 446 468 0.99
12 18 0.0005 0.027 14.6 6.1 1 23 474 496 474 496 0.98
13 18 9e-06 0.0005 20.1 3.1 1 23 502 524 502 524 0.98
14 18 4.4e-06 0.00024 21.0 5.4 1 23 530 552 530 552 0.99
15 18 1.5e-06 8.2e-05 22.5 1.7 1 23 558 580 558 580 0.99
16 18 0.00048 0.026 14.6 5.4 1 23 586 608 586 608 0.99
17 18 2.5e-05 0.0014 18.6 4.5 1 23 614 636 614 636 0.98
18 18 6.2e-07 3.4e-05 23.7 2.7 1 23 642 664 642 664 0.99

Sequence Information

Coding Sequence
atggAACTTGAATTTGTCAAAGTTGACTGTAATGAAAATGAACTATTTCTTGAATCGGCAACAGTTAATTCAAATGAGAGTGAAGAAGATCCAATTAGTGTGTCAATTATAAatcttaatcaaattaaagaaaatagaaatcaaATTCGACAAACACGATCAACTACAAATTCACTTAAGcctgtaataataaatgatatttcATATAACACAAaagataaaaataaattattccagTGCAATTTATGCCAAATAACATTTACAGAAATTGACATATTGGAGCAACACATGAAAACTCATAttcttgaaaaaccgtataaatgTTCGGtttgtaatcaaattattGCGACTTTTAATCAGTTGTCATCCCATATGAAAAttcttcataaaaataaaacagtatACGAGTGTCGCTACTGTAAAGAAAGCTTTACTAGTGAGAAACTATTTCTCAATCACGAAGTAAAGCACACGAAgcaaaaatcatttgattgtGCAGAGTGTGGAGAAACCTTTACAACGCAATCAAATCTATTAGCACATAAACGTGTGCATGTCAATGATAAGCTTTATGGCTGCAATGACTGCGATCGTCGATTTACACGATCAGAAGATTTAAATACTCACACTAGGATACATAAGGGGTTAGAGGTTTTTGAGTGCACTTTGTGCGATCGTATGTTTGCACAACATCCAAATTTGACAAATCATTTAAAACGAGTTCATCGTAAGGAATTTAATATTGTAAATATGATTGATGAAGAAATGCCCGATGAAAACTATGTAAATCCTGAAGTGAATATAGCAGGATCAGAGCCTCCTCCGTTATTACATTTGAATGAAACACACGAAAGCACAACAAATCTGAAACCTGTCAGCAATAATATTgaattgataagaaaatataaatgtccCTTGTGTATATTAGTAtttgtaaaaatgaaaagtttgGAAATTCATTGCAAAAGAAATCATTTTGACAGCTATAACGAGGAGCAACTGAAGGAAATTGAATTGCAGGTACAATTGAAtcagagaaataataatgaagcatACAATGTAGCCACAATAATACCAAGGAAGCATAATTGTCCCTGCTGTTCGGAGGTATttgaaacacaaataaaattaattgaacatTTGAAAATGTGGCATGATGTTGAAAAACCTTACAAATGTTCAGAATGTGAAATGACATTTTCCAAACCGGACACATTGGCGGAACATGTTAAGCAACATTTAGAAATTAAGCACACTTGTAAATATTGTGGTTTAAAATTCCTACAACAGTATTCTTTATTGAAACATGAAAAGCGACATCAGGGACCAACTTTATTCAAATGTGATATTTGTGCAATTCCATACGGTGACGAAAAGGATTTGCAACGACATAAACGAACTCATGCCGGTGGAAAACCTCACAAATGTcaattttgtgataaaactTTTGCACAATCCTGTGATAAAGTAAAACATATGCGGATACACACTGGAGAACGTCCGTACCAATGTAAGGATTGTGGTAAAACCTTTGCTCATTTGACGAGCATTAAGAAACATCAATTTGTGCATACCGGTGAACGACCGTTCCAATGTACAACTTGTGGAAAATCATTTCATCATAACAGTAATTTGGTTGTGCATAATCGAACGCATACAGGAGAGCGACCGTTTAAATGCGATATATGCAATAAAGCATTCTATACATCTGGACATTATGCAGATCACATGAAAATTCATACCGGTGTCAAAAATTATCAATGTCAAATTTGTGAGAAAATGTTCCTACATCAAAGTAGTTatcaaaagcataaaaaaaccCATACTGGTGAGAAACCGCATAAATGCGTAACGTGCAATAAAAGATTTTCTCAGCCAGGACATTATCGGGAACATTTACGAATTCATACAGGTGAAAAACCGTACACTTGTAAAGTATGCAATCGAACCTTTAGAAGATCTGATGCATTAAATAGTCATAAGAAAACCCACAATTTATCTGAGAAGCCAACGGTGATATCTTGTGAAGTATTTTACCCGGATCAGGAACAAAATATTCAGTATAATACAGAagaggaaaataaaacagaaacagattATCCATTACCAGTAATAACAGAAGATAAAGATAAACACTTATTACCAAATACAGATATAATAACGGTTTCTGTTGCTACTTCACGAAATGGTGAAccgattgttttaaattttactgaTTATGtcaaaaacaaagaaacaaagcaaactttttaa
Protein Sequence
MELEFVKVDCNENELFLESATVNSNESEEDPISVSIINLNQIKENRNQIRQTRSTTNSLKPVIINDISYNTKDKNKLFQCNLCQITFTEIDILEQHMKTHILEKPYKCSVCNQIIATFNQLSSHMKILHKNKTVYECRYCKESFTSEKLFLNHEVKHTKQKSFDCAECGETFTTQSNLLAHKRVHVNDKLYGCNDCDRRFTRSEDLNTHTRIHKGLEVFECTLCDRMFAQHPNLTNHLKRVHRKEFNIVNMIDEEMPDENYVNPEVNIAGSEPPPLLHLNETHESTTNLKPVSNNIELIRKYKCPLCILVFVKMKSLEIHCKRNHFDSYNEEQLKEIELQVQLNQRNNNEAYNVATIIPRKHNCPCCSEVFETQIKLIEHLKMWHDVEKPYKCSECEMTFSKPDTLAEHVKQHLEIKHTCKYCGLKFLQQYSLLKHEKRHQGPTLFKCDICAIPYGDEKDLQRHKRTHAGGKPHKCQFCDKTFAQSCDKVKHMRIHTGERPYQCKDCGKTFAHLTSIKKHQFVHTGERPFQCTTCGKSFHHNSNLVVHNRTHTGERPFKCDICNKAFYTSGHYADHMKIHTGVKNYQCQICEKMFLHQSSYQKHKKTHTGEKPHKCVTCNKRFSQPGHYREHLRIHTGEKPYTCKVCNRTFRRSDALNSHKKTHNLSEKPTVISCEVFYPDQEQNIQYNTEEENKTETDYPLPVITEDKDKHLLPNTDIITVSVATSRNGEPIVLNFTDYVKNKETKQTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-