Palb007266.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ptychoptera albimana
Gene Symbol
-
Assembly
GCA_961205885.1
Location
OY540803.1:30845107-30849089[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0017 0.092 12.9 0.8 1 23 213 235 213 235 0.97
2 20 1.1e-06 6.2e-05 22.9 2.1 2 23 242 263 241 263 0.97
3 20 3.8e-06 0.00021 21.2 1.2 2 23 270 292 269 292 0.97
4 20 0.1 5.7 7.3 3.7 1 23 346 368 346 368 0.97
5 20 8.5e-06 0.00047 20.1 1.7 2 23 375 396 374 396 0.96
6 20 2.9e-05 0.0016 18.4 1.3 3 23 404 425 403 425 0.97
7 20 0.00012 0.0064 16.6 0.4 1 23 505 527 505 527 0.97
8 20 0.00013 0.0073 16.4 2.0 2 23 534 555 533 555 0.96
9 20 0.00014 0.0078 16.3 2.7 3 23 563 584 562 584 0.94
10 20 0.0003 0.017 15.3 1.3 2 23 644 665 644 665 0.98
11 20 0.043 2.4 8.5 3.2 1 23 755 778 755 778 0.97
12 20 0.0028 0.16 12.2 0.1 2 20 789 807 788 809 0.93
13 20 3.9 2.1e+02 2.3 2.8 2 23 819 841 818 841 0.76
14 20 1.6e-05 0.00088 19.3 2.8 2 23 859 880 858 880 0.96
15 20 1.4e-07 7.9e-06 25.7 1.8 1 23 887 909 887 909 0.98
16 20 9e-08 5e-06 26.3 1.7 3 23 921 941 919 941 0.96
17 20 2.3e-05 0.0013 18.8 2.8 1 23 947 969 947 969 0.99
18 20 1.2e-06 6.6e-05 22.8 2.2 3 23 977 997 975 997 0.97
19 20 2.1e-06 0.00012 22.1 1.3 1 23 1003 1025 1003 1025 0.99
20 20 0.00026 0.014 15.5 0.1 1 23 1031 1055 1031 1055 0.93

Sequence Information

Coding Sequence
ATggataatatgtttttattagattatgattataatttaatgaaattatgtaGATTGTGTTTAACAGAATGtagtaaattaattccaaTATTTGATAATGAGAATGAGGGAGAGACAAGAATGCTAATTGAACGATTAATGACTTTTTCACAGATAAtgattaATGATGGGGATGGTATGCCAACAAATATATGTGAAACATGCACATTGCAATTGAACAGTGCTTatgattttaaagtaaaatgtgAACAAAGTGATGCTACACTTCGggaatatttattaaggaaAAGTCTCAATAATTCTGatgatttttcaaataatcGTGACAATGATAATGCAGATGAagattataatttaacaataaaaccagAGATAACATTTTTAGAAGTTGATCcattgaatgaaaataatttttatcgtgATGAGGATTATAGTAATTATCCAGATTTTGATGAAGATGATGACCGAGGATATGAATATGATGATATGAATGAAGATtttgataatgaaaatgatgaggattattttgatgatgatgaaaacgATGATgagaatgatgatgatgatacaaaatcaaaaaatgatgatgaacTGGATGgtgttgatttaaaaatggCAAAAACAAAAGACGGACGTTATGCATGTCATTTATGTGAAAAAACCTTAGCTGATACCAAAggattaaaattgcatttacgTTTGCACACAGGGCATAATCTAAAACGTTGCACAGTTTGTGACAGaggaTTTGCCACACAAAGTCACTTATCAAGACACATGATTACACATTCTAAAGACAAAAGTAAAGTTTGTAAAAATTGTGGAAAAGAGTTTGAAAATCATGATGAATTAAAAGAGCACATGAATACGGctcataatataaaattaaaaaaagaaccgATTAATAGCTCATCAGATACAAATTCTATGAACGACACAATTTCGAGTACCAATAATCATTCAAAGGATACGGATGAATTGAATGTTGATATAAACAGTATAGATTTGAAGAAAGCAAAAACTGAAAATGGTCGTTATGCATGTCATTTGTGTCCTAAAACATTAGTGGATGTCAATTGTCTGAGATTACACTTATGTCTGCATACCGGACAGAATTTAAAACGTTGCCCTATTTGTAATCGAGgttttgctaaaaaaaatcatttaacacGTCACATGGTAATACATGCAAAAGATAAAAGTAAATTGTGTAAACGGTGTGGTAGAACTTTTGAATCTAAAGAGAAGTTGAAAACACACATGGATACTGCTCATTTTCCAAAGGCAAAAGTACCACCGCCAAAATCATCGCCACCAATAGTATCGTTTTTGGATGCTGTGAAAACGGAAGCAGAGGTAAATGAAAACAGCAATATTGATAACGATACCAGTGAAATAAATACCAAAACGGATAATGAACTGATGAATATTGAAGATAATGTTGGCGATGAAAAAgttgatgataaaataaatgacgATGATTTACTAAAGGCAAGAACCGAGGATGGACGTTATGCTTGTCATTTATGTGATAAAACATTAATCGATCCAAAAGGTTTACAACTACATTTGCGTTTGCATACAGGACAGAATTTAAAACGATGCACCGTGTGCAAACGGggttttgttaaacaaaatcatttaattcgtCACATGGTGATACATGCAAATGATAAAGATAGAATTTGTAAGCGATGCGGACAGTGCTTCGATACGAAGGAAGACTTGAAAACCCACATGGATAATAATCATCAATCTAAAAGTAAATTATCTTTATCAGCAGCATCATCATCCTCGTCATCGATAAATAAaaaacgtGGTAGACCCCCAATACGCGAGAGCCTCTCAAATGACAATGATAACGATAATGATACTAAAGATGACAATACATCAAAAACGGATAGAACAATtcgtaataatataattgcCAAGTGTAAAGTATGCgatataacatttaataaaatttatttgttacgaCAGCATTTAAACAAGCATAGAAATATTGAATCAATTAAGCATATAgatttgaaaaagaaaaattatttattcgatATAAGTAGAATCAATATGCATGAAGCAAGTAATGaggatttaatgaattatataataaatgagattgataataatgaggcaaatatattattctatcaaataaataatgtcaTTGGTGATGAAATGTATATAACTGATTCAGAATCGGAGGACGAAGATGTGGCTGAACTGAGTATTCAGCTTAATGAAATAGACaagaaaactaattattattcatgtgAAATATGTAAATTGGTGTGCAATCATAAGAAGGACATATACGACCATATAAACAAGGAGCACGTTCATAATAATTTCCTGATTTTAAAATTGGTGTGCGGTAATTGTCAGAAAATGTTTCCGAACTATGATCTATACAAAAAGCATATAGTCCGCgattgtgaaaataaattaaaattgaacaaaTGTAAAATATGTAATCGTAAATTTTTATGGGATAACAGTCTGACGACCCATCTAAAGatttatcacaaaataaataaagataacaaTGAGCTGATGAAGAATAAGGAGAAAAATTGTATCTGCTAcatatgtaataaaacattttatcgcCAGGAGAATTTGGATcgtcatttaaaaattcatagtCCTGCTGAAAAGAAATTTGAATGTACGGTATGCGAGAAGAAATTTAATCGAAAAGATAATTTACGGTCGCATATGAAAATTCATAAACCGAATCGTGAGGAGGGTGATAAACATTTGTGCGTTTATTGTGGGCGTAGCTTTTCAAattcatcaaatttaattGTCCATATGAGACGGCACACTGGTGAAAAACCCTATAAATGTGATTTATGCGATAAAGGATTTCCGCGTTCATCGGATTTACAATGTCATAGACGTACGCATACTGGTGAGAAGCCCTGTCTATGTACAATCTGTGGCAAAGgtTTTTCACGATCTAATAAATTAGTTCGTCATATGCGGATCCATACTGGGGTTCGACCGTACAAATGTATGTACTGTGAACGCGCATTCACCCAATCAAATGATTTGACATTGCATATACGTCGCCACACAGGCGATAAGCCATACGTTTGTGGTATTTGTGGTGAACGATTTATACAGGGAACGGCATTACAATCTCATCGACGTATGCAAGGACATTATGAGGAGAATACATCGTCACCATTTTCCAATATAAGTGTTAATAATCCGAATCGCTACACAAATGCAAATCGTGTTAATCGTATCGGATTGTTTACCACACAAACAAcgacaataacaacagcacACACCACAACAGTAACATCAACATCACCATCCACTGCAACAAGTacttcaacaacaacatcaccatcgactaataataataataatactaatcgTAATATAAAACAGGAGAATGAAAgtgttaataatgttttaccaCAATCACGTTTATTACCACCAAGAATACCACCCTCTGGTATAATGCCATCAACATCATTTGGCTTACCAAATAATCCAACATACATACCAAATGGTATGCCCTTCTTATCAAATACTGGCGTTTTAATGCAGAATCTAGAGGTGTCCACATTATTATCAGCATACAATCAAAGTTACAATTGTTCATATAATACAGGTGCAAATTGA
Protein Sequence
MDNMFLLDYDYNLMKLCRLCLTECSKLIPIFDNENEGETRMLIERLMTFSQIMINDGDGMPTNICETCTLQLNSAYDFKVKCEQSDATLREYLLRKSLNNSDDFSNNRDNDNADEDYNLTIKPEITFLEVDPLNENNFYRDEDYSNYPDFDEDDDRGYEYDDMNEDFDNENDEDYFDDDENDDENDDDDTKSKNDDELDGVDLKMAKTKDGRYACHLCEKTLADTKGLKLHLRLHTGHNLKRCTVCDRGFATQSHLSRHMITHSKDKSKVCKNCGKEFENHDELKEHMNTAHNIKLKKEPINSSSDTNSMNDTISSTNNHSKDTDELNVDINSIDLKKAKTENGRYACHLCPKTLVDVNCLRLHLCLHTGQNLKRCPICNRGFAKKNHLTRHMVIHAKDKSKLCKRCGRTFESKEKLKTHMDTAHFPKAKVPPPKSSPPIVSFLDAVKTEAEVNENSNIDNDTSEINTKTDNELMNIEDNVGDEKVDDKINDDDLLKARTEDGRYACHLCDKTLIDPKGLQLHLRLHTGQNLKRCTVCKRGFVKQNHLIRHMVIHANDKDRICKRCGQCFDTKEDLKTHMDNNHQSKSKLSLSAASSSSSSINKKRGRPPIRESLSNDNDNDNDTKDDNTSKTDRTIRNNIIAKCKVCDITFNKIYLLRQHLNKHRNIESIKHIDLKKKNYLFDISRINMHEASNEDLMNYIINEIDNNEANILFYQINNVIGDEMYITDSESEDEDVAELSIQLNEIDKKTNYYSCEICKLVCNHKKDIYDHINKEHVHNNFLILKLVCGNCQKMFPNYDLYKKHIVRDCENKLKLNKCKICNRKFLWDNSLTTHLKIYHKINKDNNELMKNKEKNCICYICNKTFYRQENLDRHLKIHSPAEKKFECTVCEKKFNRKDNLRSHMKIHKPNREEGDKHLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDLCDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYKCMYCERAFTQSNDLTLHIRRHTGDKPYVCGICGERFIQGTALQSHRRMQGHYEENTSSPFSNISVNNPNRYTNANRVNRIGLFTTQTTTITTAHTTTVTSTSPSTATSTSTTTSPSTNNNNNTNRNIKQENESVNNVLPQSRLLPPRIPPSGIMPSTSFGLPNNPTYIPNGMPFLSNTGVLMQNLEVSTLLSAYNQSYNCSYNTGAN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-