Palb007690.1
Basic Information
- Insect
- Ptychoptera albimana
- Gene Symbol
- -
- Assembly
- GCA_961205885.1
- Location
- OY540804.1:95241-101562[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 2.8e-08 33.0 0.0 1 39 587 626 587 630 0.90 2 4 1.3e-12 2.3e-09 36.5 0.1 1 39 641 679 641 682 0.94 3 4 2.3e-16 4.2e-13 48.5 0.0 1 45 696 741 696 741 0.97 4 4 4.8e-19 8.5e-16 57.1 0.0 1 43 748 791 748 793 0.96
Sequence Information
- Coding Sequence
- ATGCTATTGATAATGagTTTATTACGTACCGcggaacaattaaaaataaaaggtttGTGTGAAGTTAGTGATCGTAATGATATAACAACAGACCTACCACCTCCctcgaaaaaacaaaaatcatcagCACATCATCAAGGAAAATTGGGTGTTTTGTCtgtagataatttaataaatccatcaacaaataataataaaaatacggcAAAAGAAGCAGTACCTACTTATAATGCAATAGATACTCCTAGAGAACTAATAGAAAATTTGGATTGCGTTGGCGACTATAATCGTTATAGTAATAAACCGACACAACAACATTATCACCATTTGcatcataattataacaatattggtcaaaataataataagtcacAAACACCATTAATATCGCCATTAACATCACATTTATCCTCATCTCCAAGTATCCAACCATTATTTACTTCGGGATCATCATTTGCGTCTGCAGCGGCTGGACTTACTGCAATTGGAAGTGTGGCTGGCAgtacaaaaacattattttcatcagttaaattttctaaagaggaggatagagaaaaaaatgtacaaacatCTAATTCTTCTATAGTTGTACTAGAGCCTCGACCAGGTACACGTAAAACGCGTGACAGAACAATGACAAGTCTTGGTGTTGGAATGGGAAtgAATGGGAGTTTAATGGGCGTATCTTTGGGATTTCTTGATTTTGCTCCAGAACCACCAGCACCATCTGCTACACCAGTGACTGAAAATACAGATATTAATTGTACTCCTAGTAACGATACTCGAGATTTATCAAATCCATCAGAGACATTAGATATAGATAATCACATGTCACAACATTCCATGCAGCAAATTGAGcatcatcagcatcagcaACAGATGCAAATACGACATCAAGAgattcaacagcaacaacaattacaacagcagcaacaacaaccccaccttcaacaacagcaacagcaaacgcaacaacaacaacagcagcaccaACAgctacaacaacaaccactacaacaacaacaaccacaacaaccacaacaacaacaaccacaacaacaaaaacaatcacAAAGGCAAACATCAATATCAAGAACAGGGAAAGGTAGAGGAAATAAAAGTCATTCTTCAACAAGTAGTCGCGGTAAGAAAGCAGGTTGTTCTGAAAGAAGGTCACCATCTTCATCGTCTTCCTCTACATCATCGTCCGGTGGTCGAAGAAGGCATCAACAAGAACAACACCAGCATAATCATTTGCTACATGATCATAGCGAtcattcaaatttaaaaacttcaaataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataacaataataataataataataataataataataataataataataataataataataataataataataatagtaatcatTCTCATATTGAGTCAATAACGAACGCAATCGATATGGACCAATCAAGCGGAATGGAGCATGATCAAATTCATGGTATGATTGTTACACCGGAAATAGTTTCTATGATGACACCTGGTCATATGgaTTTGTATCAATCGGATACTAGTGAAGATTCGCGAATGATATCAAACAGTTCTCCGAGTAATAGCAATAATCCGAATAGAACACCCACCTACATAAATATGGATAATCCTAATGAGCCCCGGACACCAAGTGGGCCAAAAACATGGACACAAGATGATATGGAATCAGCCTTAGATGCCTTAAGAACTCATCATATGAGTTTAACTAAAGCTTCAGTCACATATGGCATACCGTCGACTACATTATGGCAGCGTGCCCATCGCTTAGGAATTGATACTCCAAAGAAAGAGGGAACACCAAAATCATGGAGTGaggattcattaaataatgcaTTGGAAGCATTACGTACAGGAACTATATCAGCTAATAAAGCTTCAAAAGCATTCGGTATACCATCTTCgacattatataaaattgcacGGCGGGAGGGAATTCGTTTGGCTGCCCCATTTAATGCTGCACCAACTGCATGGACTCAAGAAGATTTGGAACGTGCATTAGAAGCGATACGTGCAGGGCATGCATCTGTTCAAAAAGCTAGTTCAGAATTTGGAATACCGACTGGAACATTATATGGTCGATGTAAACGAGAGGGTATAGAACTGTCTAGAACAAACCCGACTCCGTGGTCGGAAGACGCAATGATGGAAGCATTGGAGTCTGTTAGGGTTGGGCAAATGTCTATAAATCAAGCTGCCATTCACTTTAACCTTCCATATAGTTCATTGTATGGGCGATTTAAGCGTGGAAAATATGAATCTGGTAGTAGTGGAAGCAGTGCAAATCATGGTAGTGGAAGTGCTGGTAGTGGCGGTGTAATAAATACCCCAAATCATGGACACAGCAGTAGCTTGCTGGGTTTGTCCGGTATTGCAAATGTCGGTGTTATGGGAATTGGCGGTAGCGTTGGTAGCATAGGAGTTAGTGGTCTCGGTAGTGGGATACATATTGGCGGTGATACATCCCATTCGGATCATAGTCCAGAACATACGCAACAGTATTCATCTGTCTTGTCACCAACATCAAATAACGTAAAAATTGTACATCCATTGGCAGCAGTTCCACAATCAGCATCATCAGCTTCACTTAACCAGGACCTGAATCAACAAACAGTGACTTCAccacatcatcatcaccaattTCATTTGCATCATCTGTACCAAGTGCTCTCTCCAAATACAGAGCGTAGTTGA
- Protein Sequence
- MLLIMSLLRTAEQLKIKGLCEVSDRNDITTDLPPPSKKQKSSAHHQGKLGVLSVDNLINPSTNNNKNTAKEAVPTYNAIDTPRELIENLDCVGDYNRYSNKPTQQHYHHLHHNYNNIGQNNNKSQTPLISPLTSHLSSSPSIQPLFTSGSSFASAAAGLTAIGSVAGSTKTLFSSVKFSKEEDREKNVQTSNSSIVVLEPRPGTRKTRDRTMTSLGVGMGMNGSLMGVSLGFLDFAPEPPAPSATPVTENTDINCTPSNDTRDLSNPSETLDIDNHMSQHSMQQIEHHQHQQQMQIRHQEIQQQQQLQQQQQQPHLQQQQQQTQQQQQQHQQLQQQPLQQQQPQQPQQQQPQQQKQSQRQTSISRTGKGRGNKSHSSTSSRGKKAGCSERRSPSSSSSSTSSSGGRRRHQQEQHQHNHLLHDHSDHSNLKTSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNHSHIESITNAIDMDQSSGMEHDQIHGMIVTPEIVSMMTPGHMDLYQSDTSEDSRMISNSSPSNSNNPNRTPTYINMDNPNEPRTPSGPKTWTQDDMESALDALRTHHMSLTKASVTYGIPSTTLWQRAHRLGIDTPKKEGTPKSWSEDSLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTAWTQEDLERALEAIRAGHASVQKASSEFGIPTGTLYGRCKREGIELSRTNPTPWSEDAMMEALESVRVGQMSINQAAIHFNLPYSSLYGRFKRGKYESGSSGSSANHGSGSAGSGGVINTPNHGHSSSLLGLSGIANVGVMGIGGSVGSIGVSGLGSGIHIGGDTSHSDHSPEHTQQYSSVLSPTSNNVKIVHPLAAVPQSASSASLNQDLNQQTVTSPHHHHQFHLHHLYQVLSPNTERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -